SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44141

Length: 382 nt

UniGene Fasta

>sp_v1.1_unigene44141
GGCAAATATGAGTCATGAACTTCGAACACCTATGGCTGCTGTTATCGGGCTTTTGGACATCTTGCTATGTGATGAATATCTCACTACTGAGCAAATAGCAATAGTCTCACAAATTCGCCGTTGCTCTACAGCTTTACTTCGACTACTGAACAACATCTTAGACCTGAGCAAGGTTGAATCGGGCAAGCTAGTGTTGGAGGAGGCAGAATTCGACCTAGGGCATGAGCTTGAAGGACTTGTGGACATGTTTTCTGTGCAGTGTTTTGATCATAACATAGAAATTATTTTAGATCTGGATGATAATGTGCCAAAAGTCGTACGGGGAGATTTAGCTCGAGTGGTGCAAATATTTGCAAATCTGATTAGTAATTCAATCAAATTT

Ace file of the UniGene sp_v1.1_unigene44141

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	histidine kinase osmosensor protein	-	-	74%
FL-Next	sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	histidine kinase osmosensor protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	seed maturation	GO:0010431	Biological Process	88%
Blast2go	response to water deprivation	GO:0009414	Biological Process	88%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	88%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	88%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	88%
Blast2go	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	88%
Blast2go	Signal transduction histidine kinase, core	IPR005467	-	88%
Blast2go	Signal transduction histidine kinase, homodimeric	IPR009082	-	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SXL4

Fln msg: Distance to subject end: 577 aas, your sequence is shorter than subject: 127 - 1207

Fln protein: ANMSHELRTPMAAVIGLLDILLCDEYLTTEQIAIVSQIRRCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGHELEGLVDMFSVQCFDHNIEIILDLDDNVPKVVRGDLARVVQIFANLISNSIKF

Protein Length: 128

Fln nts: GGCAAATATGAGTCATGAACTTCGAACACCTATGGCTGCTGTTATCGGGCTTTTGGACATCTTGCTATGTGATGAATATCTCACTACTGAGCAAATAGCAATAGTCTCACAAATTCGCCGTTGCTCTACAGCTTTACTTCGACTACTGAACAACATCTTAGACCTGAGCAAGGTTGAATCGGGCAAGCTAGTGTTGGAGGAGGCAGAATTCGACCTAGGGCATGAGCTTGAAGGACTTGTGGACATGTTTTCTGTGCAGTGTTTTGATCATAACATAGAAATTATTTTAGATCTGGATGATAATGTGCCAAAAGTCGTACGGGGAGATTTAGCTCGAGTGGTGCAAATATTTGCAAATCTGATTAGTAATTCAATCAAATTT

Fln Alignment:

sp_v1.1_unigene44141___ANMSHELRTPMAAVIGLLDILLCDEYLTTEQIAIVSQIRRCSTAXXXXXXXXXXXSKVESGKLVLEEAEFDLGHELEGLVDMFSVQCFDHNIEIILDLDDNVPKVVRGDLARVVQIFANLISNSIKF
Q9SXL4_______________ANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARLVQIFANLISNSIKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain