SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44134

Length: 412 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44134
GACTTCTAGCATTTGTAAACACGCCTTGGGACTATAGTACTACATATAGGGAAATGCCAATTAACATGAAAGGAAGTGAATATACTCTATCATACTTGTTAAGTACAGACAAAATACTTGATCTATCTAACAATAATCTTATAGGACAAATACCTGCAAGCATAGGAATGTTGAATGGCTTGCGATTACTAAATTTATCTGGAAACTAATTGGAAGGATTGATTCCTGCATCTCTCAGTAACATATCTACTTTGGAGCAGTTAGACTTGTCCAAGAATAATTTGAGTGGACCGATTCCTGAAGAGCTCTCTAAACTAAATAGTTTGGATGTTCTAAATCTTTCATCTAATAACCTTTGTGGGCCCATCCCTCAAGGGACACAATTTTCCACTTTCTCTGCAACATCATTTCA

Ace file of the UniGene sp_v1.1_unigene44134 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)]	-	-	2.0e-12	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein	-	-	1.82761e-23	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 136 - 914

Fln protein: LLAFVNTPWDYSTTYREMPINMKGSEYTLSYLLSTDKILDLSNNNLIGQIPASIGMLNGLRLLNLSGN*LEGLIPASLSNISTLEQLDLSKNNLSGPIPEELSKLNSLDVLNLSSNNLCGPIPQGTQFSTFSATSF

Protein Length: 137

Fln nts: GACTTCTAGCATTTGTAAACACGCCTTGGGACTATAGTACTACATATAGGGAAATGCCAATTAACATGAAAGGAAGTGAATATACTCTATCATACTTGTTAAGTACAGACAAAATACTTGATCTATCTAACAATAATCTTATAGGACAAATACCTGCAAGCATAGGAATGTTGAATGGCTTGCGATTACTAAATTTATCTGGAAACTAATTGGAAGGATTGATTCCTGCATCTCTCAGTAACATATCTACTTTGGAGCAGTTAGACTTGTCCAAGAATAATTTGAGTGGACCGATTCCTGAAGAGCTCTCTAAACTAAATAGTTTGGATGTTCTAAATCTTTCATCTAATAACCTTTGTGGGCCCATCCCTCAAGGGACACAATTTTCCACTTTCTCTGCAACATCATTTCA

Fln Alignment:

sp_v1.1_unigene44134___STTYREMPINMKGSEYTLSYLLSTDKILDLSNNNLIGQIPASIGMXXXXXXXXXXXXXXXXLIPASLSNISTLEQLDLSKNNLSGPIPEEXXXXXXXXXXXXXXXXLCGPIPQGTQFSTFSATSF
B8LLA8_______________NSVLEEMTINIKGHIYSLPYMSSTNTIFYLSNNNLTGEIPASIGCLRSLRLLNLSGNQLEGVIPASLGNISTLEELDLSKNHLKGEIPEGLSKLHELAVLDVSSNHLCGPIPRGTQFSTFNVSSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain