SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44103

Length: 560 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44103
CAGTCTTGAAATTCAATCAAGCCATCCAATGTCATCTGCCATTACAGCATACTGTCGGCATCGAGGACTAATGACATCAGCAGAAGTGACAGAGTTCCAGGCGCTCCATGGTGAAGGAATCTGTGGTGTCATTGAAGACCATAAAATTCATATTGGGAATGCTCGTTTAGCAAGTCGGCTAGGTTGGATTCAAGATTCATCGAATACATGGAACAGCGAAGGACCAACGGTGGGGTATGTGGGCGTAGACGAGAAGCTTGCATTAGTGTTTAGTGTTGCAGATCAAATCAGACCAGAAGCAGCTGAAGCCCTGCGGGATTTGAAAAAATTAGGAATCCAATTGGCCATGCTTACCGGAGACAGCTCTACTGCCGCTGCAATTGTTGAAAAAGAGATAGGGSAGATTGCAGTACATTCCCAGTTATTACCAGAAGACAAAGTACGGATAATTAGAGAGCTGAAGCAGGTGGGCATGACTGCCATGGTGGGAGATGGAATTAACGATGGCCCGGCCTTAGCTGCAGCAGACATTGGAATAGCTATGGGCGTAGCAGGCTCTG

Ace file of the UniGene sp_v1.1_unigene44103

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HMA4; HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]	-	-	1.0e-37	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	zn cd p -type atpase	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cadmium-exporting ATPase.	EC:3.6.3.3	-	1.0e-37	47%
AutoFact	Zinc-exporting ATPase.	EC:3.6.3.5	-	1.0e-37	47%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	68%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	68%
Blast2go	HAD-like domain	IPR023214	-	68%
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	68%
Blast2go	ATPase, cation-transporting, domain N	IPR023306	-	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 186 - 998

Fln protein: SLEIQSSHPMSSAITAYCRHRGLMTSAEVTEFQALHGEGICGVIEDHKIHIGNARLASRLGWIQDSSNTWNSEGPTVGYVGVDEKLALVFSVADQIRPEAAEALRDLKKLGIQLAMLTGDSSTAAAIVEKEIGQIAVHSQLLPEDKVRIIRELKQVGMTAMVGDGINDGPALAAADIGIAMGVAGS

Protein Length: 187

Fln nts: CAGTCTTGAAATTCAATCAAGCCATCCAATGTCATCTGCCATTACAGCATACTGTCGGCATCGAGGACTAATGACATCAGCAGAAGTGACAGAGTTCCAGGCGCTCCATGGTGAAGGAATCTGTGGTGTCATTGAAGACCATAAAATTCATATTGGGAATGCTCGTTTAGCAAGTCGGCTAGGTTGGATTCAAGATTCATCGAATACATGGAACAGCGAAGGACCAACGGTGGGGTATGTGGGCGTAGACGAGAAGCTTGCATTAGTGTTTAGTGTTGCAGATCAAATCAGACCAGAAGCAGCTGAAGCCCTGCGGGATTTGAAAAAATTAGGAATCCAATTGGCCATGCTTACCGGAGACAGCTCTACTGCCGCTGCAATTGTTGAAAAAGAGATAGGGcAGATTGCAGTACATTCCCAGTTATTACCAGAAGACAAAGTACGGATAATTAGAGAGCTGAAGCAGGTGGGCATGACTGCCATGGTGGGAGATGGAATTAACGATGGCCCGGCCTTAGCTGCAGCAGACATTGGAATAGCTATGGGCGTAGCAGGCTCTG

Fln Alignment:

sp_v1.1_unigene44103___SLEIQSSHPMSSAITAYCRH-------------RGLMTS-----AEVTEFQALHGEGICGVIEDHKIHIGNARLASRLGWI-----QDSSNTWNSEGPTVGYVGVDEKLALVFSVADQIRPEAAEALRDLKKLGIQLAMLTGDSSTAAAIVEKEIGQIAVHSQLLPEDKVRIIRELKQVG-MTAMVGDGINDGPALAAADIGIAMG
B8LQ20_______________SAEASSEHPLARAVVDYAYHFHFFGEPPKDMDMQGLRTKNTAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDGVFIPSVAEEYLKDMEQHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDVKAEVIPAGKAEVIRSLQKDGTMVAMVGDGINDSPALAAADVGMAIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain