SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44101

Length: 535 nt

UniGene Fasta

>sp_v1.1_unigene44101
CAGAAATGGCAACGGTTGGAGCGCAGAGTGGGGGTAGTGTTTTTAATAGAGCGCGAGTCGATTCGTTAGATATGGAGTCGAGTAGAGTTTCGAAGACGCATCAAGGTCTGAAGGTGTTAACTACCACTGCCACTCTCAATTTGGCATATCAGACCATCGGTGTCGTTTACGGGGACATCGGCACTTCTCCACTCTATGTATTTTCCAGTACTTTTCCAGATGGGATTGCTCATACGGATGATATTATTGGAGTTTTGTCTCTCATCATATATTCGCTCACTCTGCTGCCACTTCTCAAATATGTTTTCATTGTGCTTCACGCCAATGATAATGGAGAAGGTGGTACGTTTGCGCTGTACTCCTTAATATGCCGGCATGCCAAGGTAAGTCTCGTCCCCAATTATCAACCGGAAGACAGAGAGCTTTCAACGTATAAACTTGTCACACCTACCAGACAGTTCAAAAGAGCTTTGGCGATCAAGGAAGCCCTAGAACGAAGCGCTGCAGGCAAGACAGCTTTGTTAGTGCTGGCGCT

Ace file of the UniGene sp_v1.1_unigene44101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium transporter, putative; K03549 KUP system potassium uptake protein	-	-	2.0e-38	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	4.28797e-43	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	potassium:sodium symporter activity	GO:0009674	Molecular Function	4.28797e-43	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	4.28797e-43	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: Distance to subject end: 36 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 176 - 225

Fln protein: MATVGAQSGGSVFNRARVDSLDMESSRVSKTHQGLKVLTTTATLNLAYQTIGVVYGDIGTSPLYVFSSTFPDGIAHTDDIIGVLSLIIYSLTLLPLLKYVFIVLHANDNGEGGTFALYSLICRHAKVSLVPNYQPEDRELSTYKLVTPTRQFKRALAIKEALERSAAGKTALLVLA

Protein Length: 177

Fln nts: CAGAA_-_ATGGCAACGGTTGGAGCGCAGAGTGGGGGTAGTGTTTTTAATAGAGCGCGAGTCGATTCGTTAGATATGGAGTCGAGTAGAGTTTCGAAGACGCATCAAGGTCTGAAGGTGTTAACTACCACTGCCACTCTCAATTTGGCATATCAGACCATCGGTGTCGTTTACGGGGACATCGGCACTTCTCCACTCTATGTATTTTCCAGTACTTTTCCAGATGGGATTGCTCATACGGATGATATTATTGGAGTTTTGTCTCTCATCATATATTCGCTCACTCTGCTGCCACTTCTCAAATATGTTTTCATTGTGCTTCACGCCAATGATAATGGAGAAGGTGGTACGTTTGCGCTGTACTCCTTAATATGCCGGCATGCCAAGGTAAGTCTCGTCCCCAATTATCAACCGGAAGACAGAGAGCTTTCAACGTATAAACTTGTCACACCTACCAGACAGTTCAAAAGAGCTTTGGCGATCAAGGAAGCCCTAGAACGAAGCGCTGCAGGCAAGACAGCTTTGTTAGTGCTGGCGCT

Fln Alignment:

sp_v1.1_unigene44101___VGAQSGGSVFNRARVDSLDMESSRVSKTHQG--------LKVLTTTATLNLAYQTIGVVYGDIGTSPLYVFSSTFPDGIAHTDDIIGVXXXXXXXXXXXXXXKYVFIVLHANDNGEGGTFALYSLICRHAKVSLVPNYQPEDRELSTYKLVTPTRQFKRALAIKEALERSAAGKTALLVL
A9P149_______________MSSSCSGSGSGRGRIWSLDQKIDQPIKDAEAGHVTAMDARKELSALMILRLAFHSFGVVYGDLGTSPLYVFSSTFPDGIQDSEDVMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQT-IKDKSFAARTKKWLEGKVYRKNALLLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain