SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44097

Length: 444 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44097
TGACGAACTCACTTCTCCAGGTCAAGGTTATGACAGAAGAAGTGAATAAAGTCCAAAAACCGCCGGTTTGGAACGGTCCCAACGGTATGCAAGTGTTATTTAATGTTCTACCGATACACCACACGTACGGCTTGCATGTCACATGCTTTCGAGTGTTCTTTTCGCCACTCGTCGTCGTCGTGCTCCCAAAATGGGATGTCAATTCATACGTCGAGTCTATTCCTAAATACCGTGCTACGACCATATATCTCGTCCCTTCATTGGTCCATCAACTCGTCCACCGTCCTCAGTTTAAGAATGCGGATCTCAGCACCGTCCAAACTGTTCATTGTGGGGCCGCTTACTTGCCTGTATCGCTTTCGGAAGCACTGCTTTCTCGTTTCAAAGGCATCGAGCGAATAGGGGAAGGCTATGGCATGTCTGAAAGCACCATATCCATTGCTA

Ace file of the UniGene sp_v1.1_unigene44097

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NQ94_COPC7	-	-	6.0e-26	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	4-coumarate- ligase	-	-	1.16491e-25	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	1.16491e-25	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQR8

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 147 - 537

Fln protein: TNSLLQVKVMTEEVNKVQKPPVWNGPNGMQVLFNVLPIHHTYGLHVTCFRVFFSPLVVVVLPKWDVNSYVESIPKYRATTIYLVPSLVHQLVHRPQFKNADLSTVQTVHCGAAYLPVSLSEALLSRFKGIERIGEGYGMSESTISIA

Protein Length: 148

Fln nts: TGACGAACTCACTTCTCCAGGTCAAGGTTATGACAGAAGAAGTGAATAAAGTCCAAAAACCGCCGGTTTGGAACGGTCCCAACGGTATGCAAGTGTTATTTAATGTTCTACCGATACACCACACGTACGGCTTGCATGTCACATGCTTTCGAGTGTTCTTTTCGCCACTCGTCGTCGTCGTGCTCCCAAAATGGGATGTCAATTCATACGTCGAGTCTATTCCTAAATACCGTGCTACGACCATATATCTCGTCCCTTCATTGGTCCATCAACTCGTCCACCGTCCTCAGTTTAAGAATGCGGATCTCAGCACCGTCCAAACTGTTCATTGTGGGGCCGCTTACTTGCCTGTATCGCTTTCGGAAGCACTGCTTTCTCGTTTCAAAGGCATCGAGCGAATAGGGGAAGGCTATGGCATGTCTGAAAGCACCATATCCATTGCTA

Fln Alignment:

sp_v1.1_unigene44097___VLFNVLPIHHTYGLHVTCFRXXXXXXXXXXXXKWDVNSYVESIPKYRATTIYLVPSLVHQLVHRPQFKNADLSTVQTVHCGAAYLPVSLSEALLSRF-KGIERIGEGYGMSES
B8LQR8_______________VILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQRYKVTVAPIVPPIVLDITKSPNFSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAI--FGQGYGMTEA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain