SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44038

Length: 183 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene44038
AGCCATTCGTGCAGAGGGTACAGCGCTGAAGTGGGTTCCACAGAGCAAGTGGGTCTAATTAAACAACTGAGAGAAAGGACAAGTGCACCTATGAAGGATGTCAAAGCTGCTCTTGTCGATTGCAACTGGGATCTCGAGGCTGCATATACAGAATTGAGGAAGAAGGGCATTGCAGGTGCATCA

Ace file of the UniGene sp_v1.1_unigene44038

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor Ts n=1 Tax=Solanum lycopersicum RepID=Q9SWW0_SOLLC	-	-	1.0e-14	69%
FL-Next	sp=Elongation factor Ts, mitochondrial; Zea mays (Maize).	-	-	0.0	64%
Blast2go	elongation factor	-	-	2.72279e-14	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.72279e-14	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	2.72279e-14	83%
Blast2go	Translation elongation factor EFTs/EF1B	IPR001816	-	2.72279e-14	83%
Blast2go	UBA-like	IPR009060	-	2.72279e-14	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B4FHF0

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 61 - 379

Fln protein: SHSCRGYSAEVGSTEQVGLIKQLRERTSAPMKDVKAALVDCNWDLEAAYTELRKKGIAGAS

Protein Length: 62

Fln nts: AGCCATTCGTGCAGAGGGTACAGCGCTGAAGTGGGTTCCACAGAGCAAGTGGGTCTAATTAAACAACTGAGAGAAAGGACAAGTGCACCTATGAAGGATGTCAAAGCTGCTCTTGTCGATTGCAACTGGGATCTCGAGGCTGCATATACAGAATTGAGGAAGAAGGGCATTGCAGGTGCATCA

Fln Alignment:

sp_v1.1_unigene44038___RGYSAEVGSTEQVGLIKQLRERTSAPMKDVKAALVDCNWDLEAAYTELRKKGIAGAS
B4FHF0_______________RRFGSEVSSSEQMNLIKQLRQRTSAPIKDVKASLVTCNWDIEAAQKDLRKRGVALAA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
59	25		75	0.996479
61	75	25		0.996483
62	75	25		0.996475
63	75	25		0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain