SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43963

Length: 357 nt

UniGene Fasta

>sp_v1.1_unigene43963
CGTCGTGACCTTGGCTGTCACTCAGTTTTTTGGCTTGCAAATTGGCCCTGTTTGGATGGAAGGACAGGCAGAGCCCAATGCCTAAGTGGAGAGGTGCATTGATGTGGTTCGCTCGGATTGCGGCTCGTTGGATTCTCTTCTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCCAGAAGAATTGCACCAATAGTTGTATGCAACCATATCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTTCCTAGTATTGTTGCGTCAGAAAGTCATGACAAGATCCCAGTTGTAGGGACAATTATAAGGACTACCCAGGTCATTTATGTAGATAGATCCTCATCAG

Ace file of the UniGene sp_v1.1_unigene43963

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcineurin B subunit-related; K13510 lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67]	-	-	7.0e-39	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	calcineurin b subunit-related	-	-	2.82207e-40	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	1-acylglycerophosphocholine O-acyltransferase.	EC:2.3.1.23	-	7.0e-39	66%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycerophospholipid metabolism	00564		7.0e-39	66%
AutoFact	1-alkylglycerophosphocholine O-acetyltransferase.	EC:2.3.1.67	-	7.0e-39	66%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Ether lipid metabolism	00565		7.0e-39	66%
AutoFact	Metabolic pathways	01100		7.0e-39	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phospholipid/glycerol acyltransferase	IPR002123	-	2.82207e-40	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ53

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 156 aas, your sequence is shorter than subject: 118 - 472

Fln protein: S*PWLSLSFLACKLALFGWKDRQSPMPKWRGALMWFARIAARWILFCFGYHWIRRIGKPASRRIAPIVVCNHISYTDPLFFFYELFPSIVASESHDKIPVVGTIIRTTQVIYVDRSSS

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTTGGCTTGCAAATTGGCCCTGTTTGGATGGAAGGACAGGCAGAGCCCAATGCCTAAGTGGAGAGGTGCATTGATGTGGTTCGCTCGGATTGCGGCTCGTTGGATTCTCTTCTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCCAGAAGAATTGCACCAATAGTTGTATGCAACCATATCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTTCCTAGTATTGTTGCGTCAGAAAGTCATGACAAGATCCCAGTTGTAGGGACAATTATAAGGACTACCCAGGTCATTTATGTAGATAGATCCTCATCAG

Fln Alignment:

sp_v1.1_unigene43963___FLACKLA-LFGWKDRQSPMPKW-------RGALMWFARIAARWILFCFGYHWI---RRIGKPASRRIAPI---------------------VVCNHISYTDPLFFFYELFPSIVASESHDKIPVVGTIIRTTQVIYVDRSS
B8LQ53_______________YLICRLCTLFSAPNREDDQEDYAHMSGVRRTIIVLSGRFLSRALFFTLGFYWITETRRIPDPATQSQDGLCAKEVRENEGEAEDSSYQPGAIVSNHISYLDILYHMSASFPSFVAKRSVARLPLVGLISKCLGCVYVQRES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain