SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43937

Length: 499 nt

UniGene Fasta

>sp_v1.1_unigene43937
GGCCTCGTATACCTCAGAGCTCCAATTCCTTGCCAATCCGGTGACCACACACGCCCAGAGCGCAGAGCAACACAACCAGGACGTCAACTCCCTCGGTCTCATCTCCGCCCGCATGACGGCCCAGGCCGTCGAGATTTTGAAGCTCATGACTTCGACGTACCTCGTGGCGCTCTGCCAGGCCATCGACCTACGACACCTGGAAGAGAATCTACATGCAGCAGTTCGACAAGCTGTCGGAGAAGCCTGCAAAAAGACCCTCGTTGTGGGACCCCGAGGAGAGCTCCTCCTCCTAAAGGCCGTYGACCGGGAGCCAGTGTTCTCCTACATCGACAACCCCTGCAGCGCTACCTCCGTTCTGACCGCGGTGCTCCGCCAAGTGCTCTTCGAACACGCGCTCGAAAAGACAACCGACAACGACGGTTCCATCCTTACCAGAGTCCCTGCATTCGAAGAGGAGCTCAAAGCCCGCATTGTTGCAGACGTTCATGAGACGAGGGCC

Ace file of the UniGene sp_v1.1_unigene43937

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylalanine ammonia-lyase (Fragment) n=1 Tax=Ananas comosus RepID=Q8H2A5_ANACO	-	-	64%
FL-Next	sp=Phenylalanine ammonia-lyase; Pinus taeda (Loblolly pine).	-	-	59%
Blast2go	phenylalanine ammonia-lyase	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aromatic amino acid lyase	IPR001106	-	0.0	71%
Blast2go	L-Aspartase-like	IPR008948	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: P52777

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 166 - 754

Fln protein: ASYTSELQFLANPVTTHAQSAEQHNQDVNSLGLISARMTAQAVEILKLMTSTYLVALCQAIDLRHLEENLHAAVRQAVGEACKKTLVVGPRGELLLLKAVDREPVFSYIDNPCSATSVLTAVLRQVLFEHALEKTTDNDGSILTRVPAFEEELKARIVADVHETRA

Protein Length: 167

Fln nts: GGCCTCGTATACCTCAGAGCTCCAATTCCTTGCCAATCCGGTGACCACACACGCCCAGAGCGCAGAGCAACACAACCAGGACGTCAACTCCCTCGGTCTCATCTCCGCCCGCATGACGGCCCAGGCCGTCGAGATTTTGAAGCTCATGACTTCGACGTACCTCGTGGCGCTCTGCCAGGCCATCGACCTACGACACCTGGAAGAGAATCTACATGCAGCAGTTCGACAAGCTGTCGGAGAAGCCTGCAAAAAGACCCTCGTTGTGGGACCCCGAGGAGAGCTCCTCCTCCTAAAGGCCGTtGACCGGGAGCCAGTGTTCTCCTACATCGACAACCCCTGCAGCGCTACCTCCGTTCTGACCGCGGTGCTCCGCCAAGTGCTCTTCGAACACGCGCTCGAAAAGACAACCGACAACGACGGTTCCATCCTTACCAGAGTCCCTGCATTCGAAGAGGAGCTCAAAGCCCGCATTGTTGCAGACGTTCATGAGACGAGGGCC

Fln Alignment:

sp_v1.1_unigene43937___ASYTSELQFLANPVTTHAQSAEQHNQDVNSLGLISARMTAQAVEILKLMTSTYLVALCQAIDLRHLEENLHAAVRQAVGEACKKTLVVGPRGELL--------LLKAVDREPVFSYIDNPCSATSVLTAVLRQVLFEHAL---EKTTDNDGSILTRVPAFEEELKARIVADVHETR
P52777_______________ASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain