SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43884

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43884
GAGTCCTAGAGCAGCCCTATGTGCAGAGATTAGTGTTGGTTTATCAGAATCTGGGCAACTGGTCTTCTCTGTATTACAAGAAGCCCGGATTTGACCTTGTAGCACCGGTATTGGGTATCTTGGCTTATGATGCCTCAAATCTGAGCGCCATTAATCCGCAGGAGCTTGAGCTTATGGCAACCAAACAGCCAATATCGATTCAGTTTCCAGAGGTACGACAGGGATTGACACCCATTTGTATATCCTTCTACTCGAATGGGTCAGTGAGCCTCAGTAATGCGAGCTCAAGTAATGTCTGTTCCACAAACTATCAAGGCCATTTTCTCTTATTGTCAAATCT

Ace file of the UniGene sp_v1.1_unigene43884 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1191 domain containing protein	-	-	3.0e-34	48%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	56%
Blast2go	protein	-	-	9.33053e-20	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.33053e-20	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1191	IPR010605	-	9.33053e-20	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T0P1

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 112 - 318

Fln protein: VLEQPYVQRLVLVYQNLGNWSSLYYKKPGFDLVAPVLGILAYDASNLSAINPQELELMATKQPISIQFPEVRQGLTPICISFYSNGSVSLSNASSSNVCSTNYQGHFLLLSN

Protein Length: 113

Fln nts: GAGTCCTAGAGCAGCCCTATGTGCAGAGATTAGTGTTGGTTTATCAGAATCTGGGCAACTGGTCTTCTCTGTATTACAAGAAGCCCGGATTTGACCTTGTAGCACCGGTATTGGGTATCTTGGCTTATGATGCCTCAAATCTGAGCGCCATTAATCCGCAGGAGCTTGAGCTTATGGCAACCAAACAGCCAATATCGATTCAGTTTCCAGAGGTACGACAGGGATTGACACCCATTTGTATATCCTTCTACTCGAATGGGTCAGTGAGCCTCAGTAATGCGAGCTCAAGTAATGTCTGTTCCACAAACTATCAAGGCCATTTTCTCTTATTGTCAAATCT

Fln Alignment:

sp_v1.1_unigene43884___VLEQPYVQRLVLVYQNLGNWSSLYYKKPGFDLVAPVLGILAYDASNLSAINPQELELMATKQPISIQFPEVR---QGLTPICISFYXXXXXXXXXXXXXXXXXXNYQGHFLLL
B9T0P1_______________VIEQPYVERLVLVYQNLGNWSLRYYPLSNYTYLAPVLGLLAYSASNLSATNLPELDIRATGDPITIRFPDVKSAPDGLVAKCVWFDLQGSPSFSNVASGNECSTVQQGHFSIV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain