SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43861

Length: 295 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43861
ATCCGGATCTCGTGGCGACCGATGCCACGATATCGTTTAAGACGGCGGTTTGGTTCTGGATGACGGCGCAGTCTCCGAAGCCTTCGTGCCACGACGTGATATTGGGAAGATGGAGTCCGTCAGCCACCGATACCGCTGCTGGCAGAGTGGCGGGATATGGAATGGTGACGGACATCATAAACGGTGGGCCGGAATGCGGCACAGGCACAATAAGCGACGTGCAGCAGGGGCGCATCGGGTTCTATCAGAGATACTGCAACATGCTGGGCTGGACGTGGGATCCAACCTCGACTGC

Ace file of the UniGene sp_v1.1_unigene43861 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	class I chitinase, putative (EC:3.2.1.14)	-	-	1.0e-31	71%
FL-Next	tr=Pschi4; Pinus strobus (Eastern white pine).	-	-	0.0	93%
Blast2go	basic endochitinase-like protein	-	-	5.60519e-44	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	5.60519e-44	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	5.60519e-44	86%
Blast2go	Lysozyme-like domain	IPR023346	-	5.60519e-44	86%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: O04276

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 97 - 265

Fln protein: PDLVATDATISFKTAVWFWMTAQSPKPSCHDVILGRWSPSATDTAAGRVAGYGMVTDIINGGPECGTGTISDVQQGRIGFYQRYCNMLGWTWDPTST

Protein Length: 98

Fln nts: ATCCGGATCTCGTGGCGACCGATGCCACGATATCGTTTAAGACGGCGGTTTGGTTCTGGATGACGGCGCAGTCTCCGAAGCCTTCGTGCCACGACGTGATATTGGGAAGATGGAGTCCGTCAGCCACCGATACCGCTGCTGGCAGAGTGGCGGGATATGGAATGGTGACGGACATCATAAACGGTGGGCCGGAATGCGGCACAGGCACAATAAGCGACGTGCAGCAGGGGCGCATCGGGTTCTATCAGAGATACTGCAACATGCTGGGCTGGACGTGGGATCCAACCTCGACTGC

Fln Alignment:

sp_v1.1_unigene43861___PDLVATDATISFKTAVWFWMTAQSPKPSCHDVILGRWSPSATDTAAGRVAGYGMVTDIINGGPECGTGTISDVQQGRIGFYQRYCNMLG
O04276_______________PDLVATDATVSFKTAVWFWMTAQSPKPSCHDVILGRLTPSVTDTAAGRVAGYGMLTDIINGGPECGTGTISDVQQGRIGFYQRYCKMLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain