SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43822

Length: 425 nt

UniGene Fasta

>sp_v1.1_unigene43822
GGGATAAGCAAGAATTTTCTGAGCGGCAAAATACCAGTGAGCCTTGGGGCTTTGAAGAAGTTGGAGACGGTGGATTTGAGCTATAATCAGCTCTCTGGTTCGATTCCTGCGGGACTAGGACAGCTTCCCAGGCTGTCGAATCTCATTCTCTGCTACAATAAACTCACGGGGACGATACCTAGCCTGAACCTGACTCCTCTAGTGCGTCTGGATCTCAAGCAGAATGCGCTCTCCGGCTCCATACCTTCTTTGCCGCCATCGCTTAAATATCTTGCTCTTTCCAAGAACCAATTGAGCGGCGGGATACATAATACTGGGGGTCTGCAGCAGTTAGCGTACGTTGATCTCAGCTTCAATAAATTGAGCGGAAATGTCCCCGGNTCTCTGTTTGGATTCCACATCAGTACGCTGCAGTTGCAGAGGAA

Ace file of the UniGene sp_v1.1_unigene43822

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SFK4_RICCO	-	-	7.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	leucine-rich repeat family protein	-	-	1.01628e-29	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.01628e-29	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 141 - 946

Fln protein: GISKNFLSGKIPVSLGALKKLETVDLSYNQLSGSIPAGLGQLPRLSNLILCYNKLTGTIPSLNLTPLVRLDLKQNALSGSIPSLPPSLKYLALSKNQLSGGIHNTGGLQQLAYVDLSFNKLSGNVPGSLFGFHISTLQLQR

Protein Length: 142

Fln nts: GGGATAAGCAAGAATTTTCTGAGCGGCAAAATACCAGTGAGCCTTGGGGCTTTGAAGAAGTTGGAGACGGTGGATTTGAGCTATAATCAGCTCTCTGGTTCGATTCCTGCGGGACTAGGACAGCTTCCCAGGCTGTCGAATCTCATTCTCTGCTACAATAAACTCACGGGGACGATACCTAGCCTGAACCTGACTCCTCTAGTGCGTCTGGATCTCAAGCAGAATGCGCTCTCCGGCTCCATACCTTCTTTGCCGCCATCGCTTAAATATCTTGCTCTTTCCAAGAACCAATTGAGCGGCGGGATACATAATACTGGGGGTCTGCAGCAGTTAGCGTACGTTGATCTCAGCTTCAATAAATTGAGCGGAAATGTCCCCGGaTCTCTGTTTGGATTCCACATCAGTACGCTGCAGTTGCAGAGGAA

Fln Alignment:

sp_v1.1_unigene43822___ISKNFLSGKIPVSLGALKKLETVDLSYNQLSGSIPAGLGQLPRLSNLILCYNKLTGTIP
C0PTA1_______________LSGNQLEGVIPASLGNISTLEELDLSKNHLKGEIPEGLSKLHELAVLDVSSNHLCGPIP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain