SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43773

Length: 330 nt

UniGene Fasta

>sp_v1.1_unigene43773
CCACACTATTCGTAAAGCAGGGAACGACACTAAACAGACACATGGGTTCTCATTTTCAAATCCCTGCAGGCTCGGTCACATCATTTTTCGCTTTGTCAATGGTGGTATCCATTATAGTCTACGACAAAGTGTTAGTCAGGATTTTCCGAAGATTCACGGGAAACCCCCGAGGCATCACGATCTTACAGAGGATGGGTATTGGCATCTTCGTCCACATGGTATGCATGGCAGTGGCTTCCATAACCGATGTGAAACGGATCAGTGTTGTGAAAGCTCACGGTTTTGAAGGTGACAGGAAAGCAGTATCCCCACTCACTGTTTTCATTTTAC

Ace file of the UniGene sp_v1.1_unigene43773

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter PTR3-A n=2 Tax=Arabidopsis RepID=PTR3_ARATH	-	-	8.0e-26	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	peptide transporter	-	-	1.5484e-38	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	1.5484e-38	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.5484e-38	72%
Blast2go	response to histidine	GO:0080052	Biological Process	1.5484e-38	72%
Blast2go	response to nematode	GO:0009624	Biological Process	1.5484e-38	72%
Blast2go	tripeptide transport	GO:0042939	Biological Process	1.5484e-38	72%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	1.5484e-38	72%
Blast2go	response to leucine	GO:0043201	Biological Process	1.5484e-38	72%
Blast2go	response to wounding	GO:0009611	Biological Process	1.5484e-38	72%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	1.5484e-38	72%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.5484e-38	72%
Blast2go	response to phenylalanine	GO:0080053	Biological Process	1.5484e-38	72%
Blast2go	dipeptide transport	GO:0042938	Biological Process	1.5484e-38	72%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	1.5484e-38	72%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	1.5484e-38	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	1.5484e-38	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR41

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 109 - 449

Fln protein: TLFVKQGTTLNRHMGSHFQIPAGSVTSFFALSMVVSIIVYDKVLVRIFRRFTGNPRGITILQRMGIGIFVHMVCMAVASITDVKRISVVKAHGFEGDRKAVSPLTVFIL

Protein Length: 110

Fln nts: CCACACTATTCGTAAAGCAGGGAACGACACTAAACAGACACATGGGTTCTCATTTTCAAATCCCTGCAGGCTCGGTCACATCATTTTTCGCTTTGTCAATGGTGGTATCCATTATAGTCTACGACAAAGTGTTAGTCAGGATTTTCCGAAGATTCACGGGAAACCCCCGAGGCATCACGATCTTACAGAGGATGGGTATTGGCATCTTCGTCCACATGGTATGCATGGCAGTGGCTTCCATAACCGATGTGAAACGGATCAGTGTTGTGAAAGCTCACGGTTTTGAAGGTGACAGGAAAGCAGTATCCCCACTCACTGTTTTCATTTTAC

Fln Alignment:

sp_v1.1_unigene43773___TLFVKQGTTLNRHMGSHFQIPAGSVTSFFALSMVVSIIVYDKVLVRIFRRFTGNPRGITILQRMGIGIFVHMVCMAVASITDVKRISVVKAHGFEGDRKAVSPLTVFIL
B8LR41_______________TLFIRQGTTLNRHMGSHFEIPAGSVTSFVTMSFLIFLVVYDRILVKTFRKFTGNRRGITILQRIGIGLAIHTLVMVVATITEIKRIRVVKAHGLEGNPKAVAPLTIFIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain