SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43760

Length: 255 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene43760
GCATATTAGTTCAAGCAATTGGTTTAGTGGTATTTGATATTTCTTTTGAAACCCCTGAAATAATTACTTTGGAAAAGTGGATAATAAGAGCTAAAGAGGTTGGGGCAACGGTTTTGATTGCAGTGCATGGTGGTATTGGTGAAGACGGGACACTCCAATCGATGCTAGAACATCCGAAGTGCCATACACTGGTCCAGGTGTATCCGCTTCAAGGATTTGTATGGATAAAGTTGCTACATCCCTTGCACTTAACCA

Ace file of the UniGene sp_v1.1_unigene43760

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-alanine-D-alanine ligase, putative n=1 Tax=Ricinus communis RepID=B9T6C3_RICCO	-	-	9.0e-18	69%
FL-Next	tr=D-alanine-D-alanine ligase, putative; Ricinus communis (Castor bean).	-	-	0.0	69%
Blast2go	d-alanine--d-alanine ligase family	-	-	1.65471e-17	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.65471e-17	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	D-alanine--D-alanine ligase/VANA/B/C, conserved site	IPR000291	-	1.65471e-17	76%
Blast2go	D-alanine--D-alanine ligase, N-terminal	IPR011127	-	1.65471e-17	76%
Blast2go	Pre-ATP-grasp fold	IPR013817	-	1.65471e-17	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T6C3

Fln msg: Separated hits, possible frame ERROR between 170 and 179, Distance to subject end: 317 aas, your sequence is shorter than subject: 84 - 1000

Fln protein: ILVQAIGLVVFDISFETPEIITLEKWIIRAKEVGATVLIAVHGGIGEDGTLQSMLxxxxVPYTGPGVSASRICMDKVATSLALN

Protein Length: 85

Fln nts: GCATATTAGTTCAAGCAATTGGTTTAGTGGTATTTGATATTTCTTTTGAAACCCCTGAAATAATTACTTTGGAAAAGTGGATAATAAGAGCTAAAGAGGTTGGGGCAACGGTTTTGATTGCAGTGCATGGTGGTATTGGTGAAGACGGGACACTCCAATCGATGCTAGAxxxxxxxxxAGTGCCATACACTGGTCCAGGTGTATCCGCTTCAAGGATTTGTATGGATAAAGTTGCTACATCCCTTGCACTTAACCA

Fln Alignment:

sp_v1.1_unigene43760___FDISFETPEIITLEKWIIRAKEVGATVLIAVHGGIGEDGTLQSMLExxxVPYTGPGVSASRICMDKVATSLALN
B9T6C3_______________FDIADELPTIFSMKEWIKLAKEIQATVFIAVHGGIGEDGTLQSMLExxxVPYTGPGVVASKTCMDKVATSLALS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain