SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43666

Length: 435 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene43666
AAATTACAGAAGCCGTAGCTGCAAGATTGAATCGCCTTGATGATACCCATTGTCACGAAATCGTGGGATCTTAAGCCAATCTATTAGAAAGCTGGATTCTCTTCTGTCTGTTTGAGAATTTGAATTTGCCAATGGACTCCCTTACCCAATTTTGGTCCATAATGGGGATCATAGTAGTCTTTTGGTACTTCGTCCCTCCCCAGCTGCTGGAAATGGTGAGAAGATGGCTGGAATCATGGCAGGAGGAATGGAAAGTTTACAAGTTTTTCAGGATTCCTCAGCACTATGGCTATGATGGGGTTCAAGAGAATGGATTATATAATAAGGTTAGTTCCTAGTCAGTACCCTGGCAGGTGTTGTGGATACTCATTGTGCTAATTTGTATAGTGCTAACAATTCCAAAGATATGTTTGTTTCATTAGAGGCAGGTCAGAG

Ace file of the UniGene sp_v1.1_unigene43666

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REM7_RICCO	-	-	1.0e-06	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	unknown [Picea sitchensis]	-	-	5.3494e-34	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR9

Fln msg: Separated hits, possible frame ERROR between 335 and 338, Distance to subject end: 448 aas, your sequence is shorter than subject: 101 - 550

Fln protein: MDSLTQFWSIMGIIVVFWYFVPPQLLEMVRRWLESWQEEWKVYKFFRIPQHYGYDGVQENGLYNKVSxxVSTLAGVVDTHCANLYSANNSKDMFVSLEAGQ

Protein Length: 102

Fln nts: AAATTACAGAAGCCGTAGCTGCAAGATTGAATCGCCTTGATGATACCCATTGTCACGAAATCGTGGGATCTTAAGCCAATCTATTAGAAAGCTGGATTCTCTTCTGTCTGTTTGAGAATTTGAATTTGCCA_-_ATGGACTCCCTTACCCAATTTTGGTCCATAATGGGGATCATAGTAGTCTTTTGGTACTTCGTCCCTCCCCAGCTGCTGGAAATGGTGAGAAGATGGCTGGAATCATGGCAGGAGGAATGGAAAGTTTACAAGTTTTTCAGGATTCCTCAGCACTATGGCTATGATGGGGTTCAAGAGAATGGATTATATAATAAGGTTAGTTCxxxAGTCAGTACCCTGGCAGGTGTTGTGGATACTCATTGTGCTAATTTGTATAGTGCTAACAATTCCAAAGATATGTTTGTTTCATTAGAGGCAGGTCAGAG

Fln Alignment:

sp_v1.1_unigene43666___MDSLTQFWSIMGIIVVFWYFVPPQLLEMVRRWLESWQEEWKVYKFFRIPQHYGYDGVQENGLYNKVSSxVSTLAGVVDTHCANLYSANNSKDMFVSLEAGQ
B8LKR9_______________MDSLTNFWSLMAIIVVFQNLVPTQLLEMVRRWLESWQERWKAYKFFRIPEQYGCDGFQENGLYNKVSTxVSTLGGAVDTHYANLCSAKNSNDIFVSLEAGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain