SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43647

Length: 472 nt

UniGene Fasta

>sp_v1.1_unigene43647
CCTAGCCATTGATCTGTTTAATACAGATGACCAAGAAGAGAAAAGTGACAATCTGCCGGTTGCGGTTAGCGTCCTTCTGGATATTTTGAGTTTGAATGCATTTGGTGGAGCCGTGCAGACGTTTGTTTCCAAAGCTATATTACATGACTCCATACTTGCTCAGCGAGGCCAGGATTTTAGCGGTCTCTGGCTGCTGCCTTCCTTCATTAACCATTCCTGCTTGCCGAACTCGAAATGGTTGGAAGTGGGAAGCGCCATGTTTATTCATGCCTCCAAGCCCATCAAGAGAGGAGAAGAGATTACCATTTCTTACTTTGATACCCTCGTTCCCTTGCCTCAGCGCCGAGCCATGTGCAGTGGCTGGGGCTTCAAGTGCAAGTGCAGGAGATGCATTCTGGAGCACTCTCTAGCGAAATCATTGGAGCCTATAATTAACACATGCTATGAGCAATTACATGACAAAGCCAAGGAA

Ace file of the UniGene sp_v1.1_unigene43647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain-containing protein C (Fragment) n=15 Tax=Pinus RepID=B0ZR10_PINTA	-	-	1.0e-38	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	set domain-containing protein c	-	-	9.10992e-39	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SET domain	IPR001214	-	9.10992e-39	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN6

Fln msg: STOP codon was not found. Distance to subject end: 19 aas, your sequence is shorter than subject: 157 - 491

Fln protein: LAIDLFNTDDQEEKSDNLPVAVSVLLDILSLNAFGGAVQTFVSKAILHDSILAQRGQDFSGLWLLPSFINHSCLPNSKWLEVGSAMFIHASKPIKRGEEITISYFDTLVPLPQRRAMCSGWGFKCKCRRCILEHSLAKSLEPIINTCYEQLHDKAKE

Protein Length: 158

Fln nts: CCTAGCCATTGATCTGTTTAATACAGATGACCAAGAAGAGAAAAGTGACAATCTGCCGGTTGCGGTTAGCGTCCTTCTGGATATTTTGAGTTTGAATGCATTTGGTGGAGCCGTGCAGACGTTTGTTTCCAAAGCTATATTACATGACTCCATACTTGCTCAGCGAGGCCAGGATTTTAGCGGTCTCTGGCTGCTGCCTTCCTTCATTAACCATTCCTGCTTGCCGAACTCGAAATGGTTGGAAGTGGGAAGCGCCATGTTTATTCATGCCTCCAAGCCCATCAAGAGAGGAGAAGAGATTACCATTTCTTACTTTGATACCCTCGTTCCCTTGCCTCAGCGCCGAGCCATGTGCAGTGGCTGGGGCTTCAAGTGCAAGTGCAGGAGATGCATTCTGGAGCACTCTCTAGCGAAATCATTGGAGCCTATAATTAACACATGCTATGAGCAATTACATGACAAAGCCAAGGAA

Fln Alignment:

sp_v1.1_unigene43647___SILAQRGQDF------SGLWLLPSFINHSCLPNSKWLEV-----GSAMFIHASKPIKRGEEITISYFDTLVPLPQRRAMCSGWGFKCKCRRCILEHS
A9NWN6_______________SFLEALGDDYATCCQGSAFFPLQSCINHSCEPNCKAFKREQDRDGQAILI-AIRPIMKGEQIFISYIEEDMPWKERQALLSDYGFACKCCRCLQEQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain