SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43545

Length: 574 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43545
TTAAAGTTATAGATAATCGTATTGATGGTAGCGTATATATGGCAGAAAGCTGAATATATACATGTTTGAAGGTATTAAATGTTGAAGTTATAAGGAAACACTTGGAGAAATGATGGACGACTTTCGTGGTGATCCATTCGAATGGCTTTGCATCGATGTATTTGCTGTAGTGCTGTCACTGCTGGACGTTGCGAGCTTGGCTAGGAGCGTATCAGTATCCAGCAAGTGGAAATCTATCGCCGAATCAGACATTTTGTGGGCAAAACATTGCTGCGAGCTCTGGAAAGACAAATTTATAGTGAGAACAAGTTCTCTGCATCAGATTGAACCAAGGATTACATCCTATTGCCTCTCTCTTGAAGAAGGCCGCCGGATACGAATCACCGTCGACGATTTGTGCTCATACTCCTGGAATTTCTGGTACAAAACGGTAAGCCTATACAAGATGGATATAGTTTATATGGAATTTATGGAATTTCTGGTACAATCATTAAGGTTTTTTTTATAGTTTATATGGACATAAAATTGCCAATTTTTGTATCAAGAGCAATCATAGGAATGAGTTTTGACTCAT

Ace file of the UniGene sp_v1.1_unigene43545 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein	-	-	5.0e-07	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	39%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	-
Blast2go	F-box domain, Skp2-like	IPR022364	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HS42

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 65 aas, your sequence is shorter than subject: 169 - 275

Fln protein: *SYR*SY*W*RIYGRKLNIYMFEGIKC*SYKETLGEMMDDFRGDPFEWLCIDVFAVVLSLLDVASLARSVSVSSKWKSIAESDILWAKHCCELWKDKFIVRTSSLHQIEPRITSYCLSLEEGRRIRITVDDLCSYSWNFWYKTVSLYKMDIVYMEFMEFLVQSLRFFL*

Protein Length: 170

Fln nts: TTAAAGTTATAGATAATCGTATTGATGGTAGCGTATATATGGCAGAAAGCTGAATATATACATGTTTGAAGGTATTAAATGTTGAAGTTATAAGGAAACACTTGGAGAAATGATGGACGACTTTCGTGGTGATCCATTCGAATGGCTTTGCATCGATGTATTTGCTGTAGTGCTGTCACTGCTGGACGTTGCGAGCTTGGCTAGGAGCGTATCAGTATCCAGCAAGTGGAAATCTATCGCCGAATCAGACATTTTGTGGGCAAAACATTGCTGCGAGCTCTGGAAAGACAAATTTATAGTGAGAACAAGTTCTCTGCATCAGATTGAACCAAGGATTACATCCTATTGCCTCTCTCTTGAAGAAGGCCGCCGGATACGAATCACCGTCGACGATTTGTGCTCATACTCCTGGAATTTCTGGTACAAAACGGTAAGCCTATACAAGATGGATATAGTTTATATGGAATTTATGGAATTTCTGGTACAATCATTAAGGTTTTTTTTATAGTTTATATGGACATAAAATTGCCAATTTTTGTATCAAGAGCAATCATAGGAATGAGTTTTGACTCAT

Fln Alignment:

sp_v1.1_unigene43545___WKSIAESDILWAKHCCELWKDKFIVRTSSLHQIEPRITSYCLSLEEGRRIRITVDDLCSYSWNFWY
F6HS42_______________WHGVASSDRLWSTKCEELWCGKAHIPRVSQERGLSKLAAYSFSVMDGKRSRITKDDLCDHVWNFHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain