SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43534

Length: 425 nt

UniGene Fasta

>sp_v1.1_unigene43534
AAGAGGGGTGGAGTAATAGGAGTTACAACTTATACTACTCTCGTAAGTGGATTATTTAGAGAAGGCAGACAAGGAAAAGGCTGAAATATATGTAAGTGAGATGTTTGCTCGTGGTGTTGTTTCTGATGTATTTACCTATAATATGTTGATTGATTGGTTTTCCAAGTCGGCAATGATGGACAGAGCATCGGATCTTTTTAAAGATATGTTAGAGAAGGGTTACACTCCTAATCTTGTAACATTTAATACTTTAATCAGTGGCTATAGCAAATTAGGTAAGGTTGAAAAGGCCCGTGAGTTCATGAAAGATCTCTTACAATATGGATTTAAGCCTGACGTTTTCACATTTAGTTCCATAATTGATGGTCTATGTAGAAAGCATCAGGTACACGAAGCACTTAAGTGCTTAAATGAGATTGTTCAGT

Ace file of the UniGene sp_v1.1_unigene43534

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RZM2_RICCO	-	-	3.0e-29	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	pentatricopeptide repeat-containing protein	-	-	3.05285e-34	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	3.05285e-34	67%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	3.05285e-34	67%
Blast2go	mitochondrial ATP synthesis coupled electron transport	GO:0042775	Biological Process	3.05285e-34	67%
Blast2go	response to salt stress	GO:0009651	Biological Process	3.05285e-34	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.05285e-34	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	3.05285e-34	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 62 aas, your sequence is shorter than subject: 141 - 224

Fln protein: RGVE**ELQLILLS*VDYLEKADKEKAEIYVSEMFARGVVSDVFTYNMLIDWFSKSAMMDRASDLFKDMLEKGYTPNLVTFNTLISGYSKLGKVEKAREFMKDLLQYGFKPDVFTFSSIIDGLCRKHQVHEALKCLNEIVQ

Protein Length: 142

Fln nts: AAGAGGGGTGGAGTAATAGGAGTTACAACTTATACTACTCTCGTAAGTGGATTATTTAGAGAAGGCAGACAAGGAAAAGGCTGAAATATATGTAAGTGAGATGTTTGCTCGTGGTGTTGTTTCTGATGTATTTACCTATAATATGTTGATTGATTGGTTTTCCAAGTCGGCAATGATGGACAGAGCATCGGATCTTTTTAAAGATATGTTAGAGAAGGGTTACACTCCTAATCTTGTAACATTTAATACTTTAATCAGTGGCTATAGCAAATTAGGTAAGGTTGAAAAGGCCCGTGAGTTCATGAAAGATCTCTTACAATATGGATTTAAGCCTGACGTTTTCACATTTAGTTCCATAATTGATGGTCTATGTAGAAAGCATCAGGTACACGAAGCACTTAAGTGCTTAAATGAGATTGTTCAGT

Fln Alignment:

sp_v1.1_unigene43534___EKAEIYVSEMFARGVVSDVFTYNMLIDWFSKSAMMDRASDLFKDMLEKGYTPNLVTFNTLISGYSKLGKVEKAREFMKDLLQYGFKPDVFTFSSIIDGLCRKHQVHEALK
D5AAE3_______________EALEIY-KKMDAEGCAPDVVTFNTLIFGLSKVAKVDEAKKFLKLMVRAGHPPDVITYTSLMNGMCRKGDAMGALALLEEMQQSVCQPDGCTYNTLMHGLCMCQHLHQALK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain