SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43531

Length: 502 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene43531
AGGGATGAAACACATGAATCTCAAGGGATACATGGTAGGAAATGGTGCCGCAGATCCCATGTTTGATGGTAATTCAAAAGTGCCTTTTGCCCATGGAATGGGCCTCATATCAGATGAATTATACCAGGCAGTGAAAGAAGCTTGTAATGGAAGTTACTGGAATCCAACTGGTGATGCTTGTATGTCTAAAATGCTAGCAGTATGGCAGAACCTTTTCGGGCTGTACCCAAATCATATTTTGGACCCACTGTGCTTCTGGTCCGTTGAGAAGAAGCAAACACGAAGCAGTGATGAAAATCTCAACAGAAGCTCAAAGCAATCAGCATTCTCTGAGTACCTGCTAGAAACATGGAGATTATCTAGTCTTATTCGGCTCAAAAGTTCAAAATGCCTGGATGGAGAGCTGCAACTTGGTCAGCAAGATGACCCTTGTGCCGTGGATCCTTACAAATTTTCTATAACATGGGCCAACAACCCCTCTGTGAGGAAAGCAATTCATGCC

Ace file of the UniGene sp_v1.1_unigene43531

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SMP4_RICCO	-	-	9.0e-23	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	carboxypeptidase i	-	-	1.87109e-36	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	1.87109e-36	56%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	1.87109e-36	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S10, serine carboxypeptidase	IPR001563	-	1.87109e-36	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL22

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 167 - 505

Fln protein: GMKHMNLKGYMVGNGAADPMFDGNSKVPFAHGMGLISDELYQAVKEACNGSYWNPTGDACMSKMLAVWQNLFGLYPNHILDPLCFWSVEKKQTRSSDENLNRSSKQSAFSEYLLETWRLSSLIRLKSSKCLDGELQLGQQDDPCAVDPYKFSITWANNPSVRKAIHA

Protein Length: 168

Fln nts: AGGGATGAAACACATGAATCTCAAGGGATACATGGTAGGAAATGGTGCCGCAGATCCCATGTTTGATGGTAATTCAAAAGTGCCTTTTGCCCATGGAATGGGCCTCATATCAGATGAATTATACCAGGCAGTGAAAGAAGCTTGTAATGGAAGTTACTGGAATCCAACTGGTGATGCTTGTATGTCTAAAATGCTAGCAGTATGGCAGAACCTTTTCGGGCTGTACCCAAATCATATTTTGGACCCACTGTGCTTCTGGTCCGTTGAGAAGAAGCAAACACGAAGCAGTGATGAAAATCTCAACAGAAGCTCAAAGCAATCAGCATTCTCTGAGTACCTGCTAGAAACATGGAGATTATCTAGTCTTATTCGGCTCAAAAGTTCAAAATGCCTGGATGGAGAGCTGCAACTTGGTCAGCAAGATGACCCTTGTGCCGTGGATCCTTACAAATTTTCTATAACATGGGCCAACAACCCCTCTGTGAGGAAAGCAATTCATGCC

Fln Alignment:

sp_v1.1_unigene43531___MNLKGYMVGNGAADPMFDGNSKVPFAHGMGLISDELYQAVKEACNGSYWNPTGDACMSKMLAVWQNLFGLYPNHILDPLCFWSVEKKQTRSSDENLNRSSKQSAFSEYLLETWXXXXXXXXXXXXXXDG----ELQLGQQDDPC-AVDPYKFSITWANNPSVRKAIHA
B8LL22_______________LNLKGYLVGNGGTDEAFD-NAQVPFAHGKGLISDELYQAVKETCNNSYLYSTNASCLSNLLAMWKDLIGINTAHILDPICFPISKKQESLSSQKILTKRYEKLEVFDQLLESRRRMSSHGWFTKSSEDGYLTVQLQLGYQDRPCPTVDKYQLSYIWAKNPYVRKAIHA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain