SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43427

Length: 408 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43427
ATGGGGCTGAGCAATCTCCCAACAGTGCTTTCTGGGCGGCTAAATCCTTTCCTGAGGTAGTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCTGGTCACAATTCAGGTCATAATTCCATGGGTGGAGATCTGATTGGGCAACCGTTTTGGCAGCAGAGCAGAGGTAGCCCGGAATGTTCTCCCAATCCTAGTCCAAGAATGACAAGTGGTCCAAGCTCAAGAGTTCAGAGTGGGGCAGTCACACCTTTGCATCATCGTGCTAGTGGAACAGCTCCTGGGTCTCCAACTAGCTGGCCAGAAGAAAGGAAACACCCTTGTCATCGCTTGCCTCTGCCACCGTTGTCTATTTCTAATTCTTTACCTTATGTTATGTCCTGTTCAACACCTGCTACATCTTCTGGAGT

Ace file of the UniGene sp_v1.1_unigene43427 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	66%
Blast2go	atp binding	-	-	4.11379e-23	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	4.11379e-23	74%
Blast2go	transferase activity	GO:0016740	Molecular Function	4.11379e-23	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IDA8

Fln msg: Separated hits, possible frame ERROR between 56 and 131, Distance to subject end: 503 aas, your sequence is shorter than subject: 135 - 902

Fln protein: GAEQSPNSAFWAAKSFPxxxxxxxxxxxxxxxxxxxxxxxxxxDLIGQPFWQQSRGSPECSPNPSPRMTSGPSSRVQSGAVTPLHHRASGTAPGSPTSWPEERKHPCHRLPLPPLSISNSLPYVMSCSTPATSSG

Protein Length: 136

Fln nts: ATGGGGCTGAGCAATCTCCCAACAGTGCTTTCTGGGCGGCTAAATCCTTTCCTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATCTGATTGGGCAACCGTTTTGGCAGCAGAGCAGAGGTAGCCCGGAATGTTCTCCCAATCCTAGTCCAAGAATGACAAGTGGTCCAAGCTCAAGAGTTCAGAGTGGGGCAGTCACACCTTTGCATCATCGTGCTAGTGGAACAGCTCCTGGGTCTCCAACTAGCTGGCCAGAAGAAAGGAAACACCCTTGTCATCGCTTGCCTCTGCCACCGTTGTCTATTTCTAATTCTTTACCTTATGTTATGTCCTGTTCAACACCTGCTACATCTTCTGGAGT

Fln Alignment:

sp_v1.1_unigene43427___GAEQSPNSAFWAAKSFPExxxxxxxxxxxxxxxxxxxxxxxxxDLIGQPFWQQSRGSPECSPNPSPRMTS-GPSSRVQSGAVTPLHHRASGTAPGSPTSWPEERKHPCHR
B9IDA8_______________GAEQVINSAFWAGKPYPDxxxxxxxxxxxxxxxxxxxxxxxxxDMSGQLFWQQSRGSPECSPIPSPRMTSPGPSSRVQSGAVTPIHPRAGGTIE-SQTSWPDDGKQQSHR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain