SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43415

Length: 311 nt

UniGene Fasta

>sp_v1.1_unigene43415
TTGATGGTAGTCACATCATCTAGATCATCGATAAATATTAGACATTTGGAGAAGGCCACAATTTCTACTGGCAAGGAAGGATTGGTGTCAGAAGGAAATGCAGCTTATGTTTGGTCCAGGAGTGTTGATGAACTTGAAGATCAGTTGTCTACACATGCTTGTGTAAAACAGCTATACTACTATCGCCAGCATTTGACAGTTGTTTTCCGCAATACTATGTTTGGCCCAGAGGGGCGGCCACAACACTGTTGTGCATGGCTTGGTGTCGCCAGCAGTTTTCCAGATAATGCCACTGTCAAGTGTGCCTGAGG

Ace file of the UniGene sp_v1.1_unigene43415

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nckap1 domain containing protein	-	-	3.0e-28	38%
FL-Next	Isoform 2 of Protein NAP1 OS=Arabidopsis thaliana GN=NAP1	-	-	0.0	80%
Blast2go	protein nap1	-	-	1.48243e-41	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	actin filament organization	GO:0007015	Biological Process	1.48243e-41	88%
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	1.48243e-41	88%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	1.48243e-41	88%
Blast2go	protein binding	GO:0005515	Molecular Function	1.48243e-41	88%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	1.48243e-41	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nck-associated protein 1	IPR019137	-	1.48243e-41	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5S2C4-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 701 aas, your sequence is shorter than subject: 103 - 1396

Fln protein: LMVVTSSRSSINIRHLEKATISTGKEGLVSEGNAAYVWSRSVDELEDQLSTHACVKQLYYYRQHLTVVFRNTMFGPEGRPQHCCAWLGVASSFPDNATVKCA*

Protein Length: 104

Fln nts: TTGATGGTAGTCACATCATCTAGATCATCGATAAATATTAGACATTTGGAGAAGGCCACAATTTCTACTGGCAAGGAAGGATTGGTGTCAGAAGGAAATGCAGCTTATGTTTGGTCCAGGAGTGTTGATGAACTTGAAGATCAGTTGTCTACACATGCTTGTGTAAAACAGCTATACTACTATCGCCAGCATTTGACAGTTGTTTTCCGCAATACTATGTTTGGCCCAGAGGGGCGGCCACAACACTGTTGTGCATGGCTTGGTGTCGCCAGCAGTTTTCCAGATAATGCCACTGTCAAGTGTGCCTGAGG

Fln Alignment:

sp_v1.1_unigene43415___LMVVTSSRSSINIRHLEKATISTGKEGLVSEGNAAYVWSRSVDELEDQLSTHACVKQLYYYRQHLTVVFRNTMFGPEGRPQHCCAWLGVASSFPDNATV
Q5S2C4-2_____________LMIVTSSRSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESQLSKHGSLKKLYFYHQHLTTVFRNTMFGPEGRPQHCCAWLSVASSFPECASL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain