SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43296

Length: 909 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene43296

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MIF4G domain containing protein	-	-	2.0e-39	33%
FL-Next	sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat).	-	-	0.0	55%
Blast2go	eukaryotic translation initiation factor 4 gamma	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	spread of virus in host, cell to cell	GO:0046740	Biological Process	0.0	73%
Blast2go	response to virus	GO:0009615	Biological Process	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	MIF4G-like, type 3	IPR003890	-	73%
Blast2go	MIF4-like, type 1/2/3	IPR016021	-	73%
Blast2go	Armadillo-type fold	IPR016024	-	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q03387

Fln msg: Distance to subject end: 348 aas, your sequence is shorter than subject: 302 - 788

Fln protein: RGYGYGARRSEVESHAPGSKRHKSAYQSAGQEVEQLNSQFSSATGTRPVPALVKAAISWSARRTALSKKDRVLKTVLGILDNVTPENFDVLKDQLITSGINSADILLGVVSLIFDKAVSEPTFCPIIAELCLYLWWELPQFPSEEPDGKPVTFRRILLNTCQEAFEGADNLRTEIKEMAAQDLEAERQERESMARLRTLGNITFIGELFKRKMVPEKIVHNIIQHFLGQNANIPPTDEDFEALCLLFNTVGKELEENPKSRSIIDSYFVRMEQASNNQHFANSQLRFMVRKVLDLRANKWVP

Protein Length: 303

Fln nts: CAGAGGATATGGCTACGGGGCACGAAGATCAGAGGTGGAGTCACACGCCCCAGGTTCAAAACGACACAAGTCTGCTTATCAGTCTGCTGGGCAGGAAGTTGAACAATTGAACTCACAGTTTTCATCAGCCACAGGGACGCGCCCAGTTCCTGCTCTTGTGAAGGCTGCTATTTCTTGGTCTGCTAGGAGGACAGCCTTGTCAAAAAAGGATCGAGTTCTTAAAACGGTTTTGGGGATTCTTGACAATGTAACCCCGGAAAACTTTGATGTTCTCAAAGATCAACTTATAACCTCGGGTATCAACTCAGCAGACATTCTGCTGGGAGTAGTATCTCTAATTTTTGACAAGGCGGTGTCTGAACCAACATTTTGCCCCATTATTGCTGAGCTGTGCCTTTATCTATGGTGGGAACTACCTCAATTTCCATCTGAAGAACCGGATGGTAAACCAGTAACATTCAGGCGGATTCTTCTTAACACTTGCCAAGAAGCGTTTGAAGGAGCAGATAATCTGCGAACTGAAATTAAAGAAATGGCAGCCCAAGATCTAGAAGCCGAACGCCAAGAAAGGGAGAGTATGGCTAGACTTCGCACTCTGGGAAACATCACGTTTATTGGGGAGCTTTTCAAGCGCAAAATGGTACCTGAAAAAATTGTTCATAATATTATTCAGCATTTTTTGGGTCAGAACGCGAACATTCCTCCAACTGATGAAGATTTTGAGGCGCTTTGTCTGCTTTTCAATACTGTTGGAAAAGAGCTTGAAGAAAACCCCAAGTCCCGTAGTATCATTGATTCTTACTTCGTCCGAATGGAACAGGCAAGTAACAATCAACACTTTGCAAATTCTCAACTGAGATTCATGGTTCGCAAAGTTCTTGATTTGCGTGCTAATAAATGGGTCCCTAG

Fln Alignment:

sp_v1.1_unigene43296___KSAYQSAGQEVEQLNSQFSSATGTR---PVPALVKAAISWSARRTALSKKDRVLKTVLGILDNVTPENFDVLKDQLITSGINSADILLGVVSLIFDKAVSEPTFCPIIAELCLYLWWELPQFPSEEPDGKPVTFRRILLNTCQEAFEGADNLRTEIKEMAAQDLEAERQERESMARLRTLGNITFIGELFKRKMVPEKIVHNIIQHFLGQNANIPPTDEDFEALCLLFNTVGKELEENPKSRSIIDSYFVRMEQASNNQHFANSQLRFMVRKVLDLRANKWVP
Q03387_______________KEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQL-TPRSKFMVRDLIDLRSNNWVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain