SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43287

Length: 511 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene43287
TGCAAAGATAACAGAAAATCGAGTGGCTACAGCTGTAGTTGGCCATGAATGGAGGGATGGCGACGACAAAGTCATCCCTCTAAAGCGGTGGCTCGAAGAACGGCGCTTCATTCAGGGTGAAATGCAGCAGCTTCGAGAGAAAGTAACCCTGGCTGAACGTACTGCTAAGGCTGAAGAGAAACTCAAAGACAAATTCAAGTTAAGATTGAAAGTGTTGGAAGAAGCAGTGAGAGGTGGTGCAGGGGTTGGAGCGTTTCAACGTCGTGCAACCAGAACGAATGGCTCGTCACGCTGCGGGCAGCTGGTTTGTGGAGATGATTCTGCAAGGACCTTGCAATCAAATGGCAACAGCTTGGAAACAGTTTTAACGTGGAAACACTCTGTWTCAAGCAWTAACAACACTGTATTAACCCAGAAAGAAACACCACAGCTTGTTGTTGTTGATGGGACTATTAATGCGGCATCAGATTTGATAAATTCTTTATCAAATCAACATGTGGAACTCAAAAAT

Ace file of the UniGene sp_v1.1_unigene43287

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	70 kDa microtubule associated protein Type 1 n=2 Tax=Arabidopsis RepID=Q9C9X0_ARATH	-	-	8.0e-25	48%
FL-Next	sp=Microtubule-associated protein 70-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	protein	-	-	1.35474e-24	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.35474e-24	68%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	1.35474e-24	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Myosin II heavy chain-like	IPR009768	-	1.35474e-24	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C9X0

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 170 - 622

Fln protein: AKITENRVATAVVGHEWRDGDDKVIPLKRWLEERRFIQGEMQQLREKVTLAERTAKAEEKLKDKFKLRLKVLEEAVRGGAGVGAFQRRATRTNGSSRCGQLVCGDDSARTLQSNGNSLETVLTWKHSVSSNNNTVLTQKETPQLVVVDGTINAASDLINSLSNQHVELKN

Protein Length: 171

Fln nts: TGCAAAGATAACAGAAAATCGAGTGGCTACAGCTGTAGTTGGCCATGAATGGAGGGATGGCGACGACAAAGTCATCCCTCTAAAGCGGTGGCTCGAAGAACGGCGCTTCATTCAGGGTGAAATGCAGCAGCTTCGAGAGAAAGTAACCCTGGCTGAACGTACTGCTAAGGCTGAAGAGAAACTCAAAGACAAATTCAAGTTAAGATTGAAAGTGTTGGAAGAAGCAGTGAGAGGTGGTGCAGGGGTTGGAGCGTTTCAACGTCGTGCAACCAGAACGAATGGCTCGTCACGCTGCGGGCAGCTGGTTTGTGGAGATGATTCTGCAAGGACCTTGCAATCAAATGGCAACAGCTTGGAAACAGTTTTAACGTGGAAACACTCTGTtTCAAGCAaTAACAACACTGTATTAACCCAGAAAGAAACACCACAGCTTGTTGTTGTTGATGGGACTATTAATGCGGCATCAGATTTGATAAATTCTTTATCAAATCAACATGTGGAACTCAAAAAT

Fln Alignment:

sp_v1.1_unigene43287___AKITENRVATAVVGHEWRDGDDKVIPLKRWLEERRFIQGEMQQLREKVTLAERTAKAEEKLKDKFKLRLKVLEEXXXXXXXXXXXXXXXTR--TNGSSRCGQLVCGDDSARTLQSNGNSLETVLTWKHSVSSNNNTVL
Q9C9X0_______________AKVTANRVAT-VVANEWKDGNDKVMPVKQWLEERRFLQGEMQQLRDKLAISDRAAKSEAQLKDKFQLRLRVLEETLRGTSSISIRNTPEGRSMSNGPSR-RQSIGGSDNLQKFASNG-FLSKKTPMRNSFTSNSTSVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain