SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43225

Length: 552 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43225
GCTTATTGATTTTTCAGATGTCTTGCAAATAAATGTCTATGTGCTAGGTGCTGTGTTTTTGCAACTTTGCAAATTATTGAGACTTGAGCAACATCCAATCATTCAAAAGCCAGTTGACCCCAGCCTGTTTATTCATCGTTTTGCTGATCGCTTAGTTGGGAGAGCAACAACTAGAAAGCAGTTTCATTCAATTTCAAATACTGCGTTGCGAATACTGGCAAGTATGAAACGTGATTGGATGCAGACTGGGAGAAAACCAAGTGGAGTGTGTGGTGCAGCACTATATATATCTGCACTCTCACATGGCTTTGGATGCACAAAAGCCGATGTTGTGAGTATCGTGCATATTTGTGAAGCAACATTGACAAAGCGGTTGATTGAGTTCGAAAATACAGATTCAGGCAGTTTGACTATAGAGGAGTTTGAAAACAAGGCCAAGGAGCTTGAGGCAGAAATGCAGACAATTAAAGTTCCACCAATAAACGCAGAGACCAAAGTAAATCTGTTATGCCTTTTATTCCTTTAGTCTCTGCGTTTATTGGTAGGAAACTT

Ace file of the UniGene sp_v1.1_unigene43225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor brf1, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Transcription factor TFIIB	IPR000812	-	82%
Blast2go	Transcription factor TFIIB, cyclin-related	IPR013150	-	82%
Blast2go	Cyclin-like	IPR013763	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 411 aas, your sequence is shorter than subject: 175 - 746

Fln protein: LIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSISNTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEATLTKRLIEFENTDSGSLTIEEFENKAKELEAEMQTIKVPPINAETKVNLLCLLFL*

Protein Length: 176

Fln nts: GCTTATTGATTTTTCAGATGTCTTGCAAATAAATGTCTATGTGCTAGGTGCTGTGTTTTTGCAACTTTGCAAATTATTGAGACTTGAGCAACATCCAATCATTCAAAAGCCAGTTGACCCCAGCCTGTTTATTCATCGTTTTGCTGATCGCTTAGTTGGGAGAGCAACAACTAGAAAGCAGTTTCATTCAATTTCAAATACTGCGTTGCGAATACTGGCAAGTATGAAACGTGATTGGATGCAGACTGGGAGAAAACCAAGTGGAGTGTGTGGTGCAGCACTATATATATCTGCACTCTCACATGGCTTTGGATGCACAAAAGCCGATGTTGTGAGTATCGTGCATATTTGTGAAGCAACATTGACAAAGCGGTTGATTGAGTTCGAAAATACAGATTCAGGCAGTTTGACTATAGAGGAGTTTGAAAACAAGGCCAAGGAGCTTGAGGCAGAAATGCAGACAATTAAAGTTCCACCAATAAACGCAGAGACCAAAGTAAATCTGTTATGCCTTTTATTCCTTTAGTCTCTGCGTTTATTGGTAGGAAACTT

Fln Alignment:

sp_v1.1_unigene43225___LIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSISNTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEATLTKRLIEFENTDSGSLTIEEFENKAKELEAEMQTIKVPPINAETK
B8LQP4_______________LIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEFENTDSGSLTIEEFESKAKELEAEMQTIKVPAINAETK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain