SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43137

Length: 385 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene43137
AAAAGGTTTCGGGAGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCATCCAGAGCAGATAGCATGATATTTCACAATTTTTGTCTCACTATTCCTGCACGCCATACAGTGGCTTTAGTGGGCGGCAGTGGATCTGGAAAGTCCACAGCCATTTCATTATTAGAACGGTTCTACGATCCACTAAAAGGAGAAATTCTTGTGGATGGAGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAACCAAATCGGACTAGTTAGTCAAGAGCCTGCTCTGTTCGCCTCCTCCATTCGTGAGAATATTTTGTTTGGAAAGGATGATGCAACTATGGATGATATCATTAGTGTTGCAAAAGCTTCCAATGCCCACAACTTCATTAC

Ace file of the UniGene sp_v1.1_unigene43137

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P-glycoprotein n=1 Tax=Arabidopsis thaliana RepID=Q0WRL4_ARATH	-	-	72%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	57%
Blast2go	abc transporter family protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Thiamine metabolism	00730	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 127 - 1316

Fln protein: KVSGEVEFRNVQFAYPSRADSMIFHNFCLTIPARHTVALVGGSGSGKSTAISLLERFYDPLKGEILVDGENIKGLQLKWLRNQIGLVSQEPALFASSIRENILFGKDDATMDDIISVAKASNAHNFI

Protein Length: 128

Fln nts: AAAAGGTTTCGGGAGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCATCCAGAGCAGATAGCATGATATTTCACAATTTTTGTCTCACTATTCCTGCACGCCATACAGTGGCTTTAGTGGGCGGCAGTGGATCTGGAAAGTCCACAGCCATTTCATTATTAGAACGGTTCTACGATCCACTAAAAGGAGAAATTCTTGTGGATGGAGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAACCAAATCGGACTAGTTAGTCAAGAGCCTGCTCTGTTCGCCTCCTCCATTCGTGAGAATATTTTGTTTGGAAAGGATGATGCAACTATGGATGATATCATTAGTGTTGCAAAAGCTTCCAATGCCCACAACTTCATTAC

Fln Alignment:

sp_v1.1_unigene43137___VSGEVEFRNVQFAYPSRADSMIFHNFCLTIPARHTVALVGGSGSGKSTAISLLERFYDPLKGEILVDGENIKGLQLKWLRNQIGLVSQEPALFASSIRENILFGKDDATMDDIISVAKASNAHNFI
E6Y0T0_______________IQGDIELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDGATLEEIKAAAELANAAKFI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain