SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43120

Length: 366 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene43120
AGTAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTGCAGAGTATGAACGGGATGGGAACATTGTGAATAGTCGATATGATCTCTTCCCGATTGAAGATATGCCTGAAGCTGCTGACCTTGTAACTCGCTTACTGGATAGTGCTGCTGATCAAAGGCCCAGGGCAGCTGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTGTCATTTCTTCGGGAAGCCAGTGATAGGGTGGAATTAGAGAATCGAGAGCAACAGTCTGACCTTTTGCAGGCATTGGAAAGCGTTGCATCTCTAGCTATTGGTGGGACATGGGATGGTAAATT

Ace file of the UniGene sp_v1.1_unigene43120

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase, putative (EC:2.7.11.1); K08852 serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-]	-	-	4.00001e-41	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	protein inositol requiring 1-1	-	-	9.586e-41	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	4.00001e-41	68%
AutoFact	Hydrolases, Acting on ester bonds, Endoribonucleases producing 5'-phosphomonoesters.	EC:3.1.26.-	-	4.00001e-41	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	activation of signaling protein activity involved in unfolded protein response	GO:0006987	Biological Process	9.586e-41	78%
Blast2go	endoribonuclease activity	GO:0004521	Molecular Function	9.586e-41	78%
Blast2go	transferase activity	GO:0016740	Molecular Function	9.586e-41	78%
Blast2go	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	9.586e-41	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	9.586e-41	78%
Blast2go	KEN domain, ribonuclease activator	IPR010513	-	9.586e-41	78%
Blast2go	Protein kinase-like domain	IPR011009	-	9.586e-41	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	9.586e-41	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AX40

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 121 - 367

Fln protein: VDLFSLGCVLFFCITGGKHPFGAEYERDGNIVNSRYDLFPIEDMPEAADLVTRLLDSAADQRPRAAEVLQHPFFWSSEKRLSFLREASDRVELENREQQSDLLQALESVASLAIGGTWDGK

Protein Length: 122

Fln nts: AGTAGATTTATTCAGTCTAGGATGTGTTCTTTTCTTTTGCATCACTGGAGGTAAACATCCATTTGGTGCAGAGTATGAACGGGATGGGAACATTGTGAATAGTCGATATGATCTCTTCCCGATTGAAGATATGCCTGAAGCTGCTGACCTTGTAACTCGCTTACTGGATAGTGCTGCTGATCAAAGGCCCAGGGCAGCTGAAGTTTTGCAGCATCCTTTCTTTTGGAGTTCAGAAAAGCGCCTGTCATTTCTTCGGGAAGCCAGTGATAGGGTGGAATTAGAGAATCGAGAGCAACAGTCTGACCTTTTGCAGGCATTGGAAAGCGTTGCATCTCTAGCTATTGGTGGGACATGGGATGGTAAATT

Fln Alignment:

sp_v1.1_unigene43120___VDLFSLGCVLFFCITGGKHPFGAEYERDGNIVNSRYDLFPIEDMPEAADLVTRLLDSAADQRPRAAEVLQHPFFWSSEKRLSFLREASDRVELENREQQSDLLQALESVASLAIGGTWDGK
A5AX40_______________VDLFSLGCVLFFCLTGGKHPYGDNLERDVNIVNNRKDLFLIENIPEAVDLFSLLLEPDPDLRPKAMDVLHHPFFWSSEMRLSFLRDVSDRVELEDRENESQLLKELESIGTLALNGKWDEK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
166	25		75		0.996473
197	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain