SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43081

Length: 394 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene43081
CGTCGTGACCTTGGCTGTCACTCAATCGACGAGGCCAGCATTGTGGCTCTTCCGGGCAGACCTAGTAAGCCGACTACTGTAAATTTATTCTTTTAGGGTTACAGAAGAAGAAAATACAAGATGGGCAGGTCTCCTTGCTGCTCAAAAGAAGGGCTCAACCGCGGGGCCTGGAGCAAAAGGGAAGATATTATTCTCTCCGAATACATTCGAATTCATGGGGATGGTGGATGGAGAAATATCCCCAAAAGAGCAGGTCTCAAACGGTGTGGAAAGAGCTGTAGATTACGATGGCTGAACTATCTTCGCCCCGACATTAAACGTGGAAACATTTCCCCTGATGAGGAGGAACTCGTAATTCGGCTCCATCGCCTTCTTGGCAATCGATGGTCGCTTA

Ace file of the UniGene sp_v1.1_unigene43081

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors	-	-	4.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	myb transcription factor r2r3-like protein	-	-	4.2039e-45	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	4.2039e-45	92%
Blast2go	Homeodomain-like	IPR009057	-	4.2039e-45	92%
Blast2go	Homeodomain-related	IPR012287	-	4.2039e-45	92%
Blast2go	Myb, DNA-binding	IPR014778	-	4.2039e-45	92%
Blast2go	Myb transcription factor	IPR015495	-	4.2039e-45	92%
Blast2go	Myb domain, DNA-binding	IPR017930	-	4.2039e-45	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 301 aas, your sequence is shorter than subject: 91 - 392

Fln protein: MGRSPCCSKEGLNRGAWSKREDIILSEYIRIHGDGGWRNIPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELVIRLHRLLGNRWSL

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGACGAGGCCAGCATTGTGGCTCTTCCGGGCAGACCTAGTAAGCCGACTACTGTAAATTTATTCTTTTAGGGTTACAGAAGAAGAAAATACAAG_-_ATGGGCAGGTCTCCTTGCTGCTCAAAAGAAGGGCTCAACCGCGGGGCCTGGAGCAAAAGGGAAGATATTATTCTCTCCGAATACATTCGAATTCATGGGGATGGTGGATGGAGAAATATCCCCAAAAGAGCAGGTCTCAAACGGTGTGGAAAGAGCTGTAGATTACGATGGCTGAACTATCTTCGCCCCGACATTAAACGTGGAAACATTTCCCCTGATGAGGAGGAACTCGTAATTCGGCTCCATCGCCTTCTTGGCAATCGATGGTCGCTTA

Fln Alignment:

sp_v1.1_unigene43081___SPCCSKEGLNRGAWSKREDIILSEYIRIHGDGGWRNIPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELVIRLHRLLGNRWSL
B8LMJ6_______________SPCCSKEGLNRGAWTKKEDMILSEYIRIHGDGGWRNLPKKAGLKRCGKSCRLRWLNYLRPDIKRGNICPDEEELIIRLHRLLGNRWSL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain