SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43080

Length: 434 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene43080
GGGAGGAGAACGCATGATGGTCTGTTCTCAGAGCACAGAATTTGGATGTGGCAATTACTGTGGTAACCTTCTTCCATGTGGTAATCACCATTGTCAAAAGCCTTGCCATAGGATATCACTACCCCAAATGGAACGTACATATGTATCCCAGTTTAGTGGAAGAAATATCGAGCGGACAGAGAGGAACACTGTGTTTTCTTCAGATGGAAGATGCACAGAGTTATTAGACTCATGTGAGGAGTGTGTCCTTACATGCCAGAAGAGACGGTCACCTCCCTGTCCACATCCATGCCCACAGATGTGCCATCCTGGAGATTGTGCACCATGTAAAGTACTTCTAAAACGGGCTTGCCACTGTGGTGCTATGGTTCATGTTTTGAATGCAATCAGTTCAACAGTCTATCTGAAGGGCAACAACTGAAAGTTCGGACATG

Ace file of the UniGene sp_v1.1_unigene43080 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear transcription factor, X-box binding, putative	-	-	1.0e-23	40%
FL-Next	sp=NF-X1-type zinc finger protein NFXL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	nuclear transcription x-box	-	-	5.6622e-26	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, NF-X1-type	IPR000967	-	5.6622e-26	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FFK8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 186 aas, your sequence is shorter than subject: 140 - 883

Fln protein: GGERMMVCSQSTEFGCGNYCGNLLPCGNHHCQKPCHRISLPQMERTYVSQFSGRNIERTERNTVFSSDGRCTELLDSCEECVLTCQKRRSPPCPHPCPQMCHPGDCAPCKVLLKRACHCGAMVHVLNAISSTVYLKGNN*

Protein Length: 141

Fln nts: GGGAGGAGAACGCATGATGGTCTGTTCTCAGAGCACAGAATTTGGATGTGGCAATTACTGTGGTAACCTTCTTCCATGTGGTAATCACCATTGTCAAAAGCCTTGCCATAGGATATCACTACCCCAAATGGAACGTACATATGTATCCCAGTTTAGTGGAAGAAATATCGAGCGGACAGAGAGGAACACTGTGTTTTCTTCAGATGGAAGATGCACAGAGTTATTAGACTCATGTGAGGAGTGTGTCCTTACATGCCAGAAGAGACGGTCACCTCCCTGTCCACATCCATGCCCACAGATGTGCCATCCTGGAGATTGTGCACCATGTAAAGTACTTCTAAAACGGGCTTGCCACTGTGGTGCTATGGTTCATGTTTTGAATGCAATCAGTTCAACAGTCTATCTGAAGGGCAACAACTGAAAGTTCGGACATG

Fln Alignment:

sp_v1.1_unigene43080___ERMMVCSQSTEFGCGNYCGNLLPCGNHHCQKPCHRISLPQMERTYVSQFSGRNIERTERNTVFSSDGRCTELLDSCEECVLTCQKRRSXXXXXXXXXXXXPGDCAPCKVLLKRACHCGAMVHVLNAI
Q9FFK8_______________EKRMICSDRTQFACDNLCGNPLPCGNHYCSYFCHALDI-------------RSSSLDKRS-------------ESCEKCDLRCQKERTPRCQHPCPRRCHPEDCPPCKTLVKRSCHCGAMVHAFECI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain