SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene43052

Length: 481 nt

UniGene Fasta

>sp_v1.1_unigene43052
ATCATATGAGACATTGGAGGCAGGATGTAAAGAACTGAGGTGCAGTCGTCTATTCCTAAAGTTGCTGGAAGCTGTTCTGAAAACAGGTAATCGCATGAATGTTGGTACCTATCGTGGAGGAGCTCGAGCTTTTAAGCTTGACACCCTTCTCAAATTAGCAGATGTCAAAGGTACAGATGGCAAGACAACCTTATTACATTTTGTTGTTCAAGAGATTGTAAGAGCAGAAGGTCGGCGTGCTGCACGTGCTGCTCAGCAATCTGGCTCTAGTACTACTTCCAACGTTGTAGATGGTCAAACGTATCATATAAGCAGTGAAAATGAGAGTTCTGAGGACAGAGAAGAGTATTTTAGAACACATGCTACAAATGCTGGTCCTCAGTCCTTTTCTAGCATTACTTCCAGTGTCGTAGATGGTCAAGCTTATCCTAGAAGTGGCGGTGAAAATGAGAGTTCTGAGGATAGAGAAGACTACTATAGA

Ace file of the UniGene sp_v1.1_unigene43052

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA03_RICCO	-	-	1.0e-28	87%
FL-Next	sp=Formin-like protein 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Blast2go	protein	-	-	1.87841e-28	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	endosperm development	GO:0009960	Biological Process	1.87841e-28	92%
Blast2go	actin nucleation	GO:0045010	Biological Process	1.87841e-28	92%
Blast2go	seed morphogenesis	GO:0048317	Biological Process	1.87841e-28	92%
Blast2go	actin filament polymerization	GO:0030041	Biological Process	1.87841e-28	92%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.87841e-28	92%
Blast2go	cell wall	GO:0005618	Cellular Component	1.87841e-28	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-binding FH2	IPR015425	-	1.87841e-28	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94B77

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 160 - 900

Fln protein: SYETLEAGCKELRCSRLFLKLLEAVLKTGNRMNVGTYRGGARAFKLDTLLKLADVKGTDGKTTLLHFVVQEIVRAEGRRAARAAQQSGSSTTSNVVDGQTYHISSENESSEDREEYFRTHATNAGPQSFSSITSSVVDGQAYPRSGGENESSEDREDYYR

Protein Length: 161

Fln nts: ATCATATGAGACATTGGAGGCAGGATGTAAAGAACTGAGGTGCAGTCGTCTATTCCTAAAGTTGCTGGAAGCTGTTCTGAAAACAGGTAATCGCATGAATGTTGGTACCTATCGTGGAGGAGCTCGAGCTTTTAAGCTTGACACCCTTCTCAAATTAGCAGATGTCAAAGGTACAGATGGCAAGACAACCTTATTACATTTTGTTGTTCAAGAGATTGTAAGAGCAGAAGGTCGGCGTGCTGCACGTGCTGCTCAGCAATCTGGCTCTAGTACTACTTCCAACGTTGTAGATGGTCAAACGTATCATATAAGCAGTGAAAATGAGAGTTCTGAGGACAGAGAAGAGTATTTTAGAACACATGCTACAAATGCTGGTCCTCAGTCCTTTTCTAGCATTACTTCCAGTGTCGTAGATGGTCAAGCTTATCCTAGAAGTGGCGGTGAAAATGAGAGTTCTGAGGATAGAGAAGACTACTATAGA

Fln Alignment:

sp_v1.1_unigene43052___SYETLEAGCKELRCSRLFLKLLEAVLKTGNRMNVGTYRGGARAFKLDTLLKLADVKGTDGKTTLLHFVVQEIV
Q94B77_______________SFQKLEVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEII

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
147			33	66	0.997452
152		66	33		0.997452
154	66	33			0.997452
155	66	33			0.997452
158	66		33		0.997452
161	66			33	0.997452
164	66	33			0.997452
165	33			66	0.997452
166		33	66		0.997452
202		33		66	0.997453
250			20	80	0.995493
255		80	20		0.995493
257		80	20		0.995493
259	20		80		0.995493
375	25		75		0.996481
413		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain