SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42990

Length: 472 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene42990
CATCATTTTCAAGTCTGCGCTCTTTAACAGTGTTGAGAATGTCTAAATGTTCTGGTTTGACGCAGCTACCAGAACATTTGGGATCATTGAATTGTCTGCAAGAACTCTCTTTGGATGACTGTACAAGTCTAAAAGCGCTTCCAAGCGAGCTTGAAAATCTTACAGCATTGCAAAAACTCGATTTACCAGACTGTACAAGTCTAAAAGCGCTTCCTAGAAGTCTTGGAAAGCTCACATCATTGCAACAACTCGATTTGAGCGACTGCACAAGTCTAGAAGCTCTTCCTAGCAGTCTTGAGGAGCTTTCATCATTGAGATTATTGGACTTATCCAACTGTGAAGACATTAAAAATCTCCCTTCTGGCTTAGAAAAGTTAACATCGCTTGTTCAGCTTAGTCTACATGCTTGTGGTGGGCTAAGTAGTATTCCTGGAAGCATTGGGCAACTGAAGTTGAATTCAATCAGCTTATA

Ace file of the UniGene sp_v1.1_unigene42990 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	1.66794e-24	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.66794e-24	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX1

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 156 - 1011

Fln protein: SFSSLRSLTVLRMSKCSGLTQLPEHLGSLNCLQELSLDDCTSLKALPSELENLTALQKLDLPDCTSLKALPRSLGKLTSLQQLDLSDCTSLEALPSSLEELSSLRLLDLSNCEDIKNLPSGLEKLTSLVQLSLHACGGLSSIPGSIGQLKLNSISL

Protein Length: 157

Fln nts: CATCATTTTCAAGTCTGCGCTCTTTAACAGTGTTGAGAATGTCTAAATGTTCTGGTTTGACGCAGCTACCAGAACATTTGGGATCATTGAATTGTCTGCAAGAACTCTCTTTGGATGACTGTACAAGTCTAAAAGCGCTTCCAAGCGAGCTTGAAAATCTTACAGCATTGCAAAAACTCGATTTACCAGACTGTACAAGTCTAAAAGCGCTTCCTAGAAGTCTTGGAAAGCTCACATCATTGCAACAACTCGATTTGAGCGACTGCACAAGTCTAGAAGCTCTTCCTAGCAGTCTTGAGGAGCTTTCATCATTGAGATTATTGGACTTATCCAACTGTGAAGACATTAAAAATCTCCCTTCTGGCTTAGAAAAGTTAACATCGCTTGTTCAGCTTAGTCTACATGCTTGTGGTGGGCTAAGTAGTATTCCTGGAAGCATTGGGCAACTGAAGTTGAATTCAATCAGCTTATA

Fln Alignment:

sp_v1.1_unigene42990___SFSSLRSLTVLRMSKCSGLTQLPEHLGSLNCLQELSLDDCTSLKALPSELENLTALQKLDLPDCTSLKALPRSLGKLTSLQQLDLSDCTXXXXXXXXXXXXXXXXXXXXSN-CEDIKNLPSGLEKLTSLVQLSLHACGGLSSIPGSIGQLK
C0PPX1_______________SISKLQLLRVLRMDYCSSLMKVPEGLGSLNSLQELNFQGCTNLRKLPNSLGKLFSLRILDLSSCEKLKELPHGIENLTSLVNLSFHKCASLRSIPESIGRLKSSAFSMDMSCCSSLRELPNLFVELGNLRELNLSDCTSLEKLPKGFTQLK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
139		33		66	0.997452
140	33		33	33	0.997752
167	33		66		0.997452
206	33	33	33		0.997753
212	33	33		33	0.997753
213	33	66			0.997452
214	33		66		0.997452
240		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain