SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42899

Length: 567 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42899
GGACAGCAGTTCACAGTATTTGTTAAAGCCTCAATAACAAATACTGTGAACTGCTGTCCAAAAAAATTCCTTATAGCAATGTAGTTGTCATCTCAGTTGCTCGACTTCCATATAGGTGTTTTTAGGTTCTGTGTTACTTTCTTAAACCCTTTTTCCGTATTTCAATCGCTGAAGAAAAAAATTTATATCCATCTTCTACTTGTTACTTCTTGAAATGGAGGAAACTTTTGTCCCATTTCGAGGTATCAAGAACGATTTGAAAGGAAGATTACTGTGTTACAAGCAAGACTGGACTGGTGGCTTCACTGCAGGATACAGAATTCTTGCTCCCACAACTTACATATTCTTTGCATCAGCCATTCCCGTGATATCATTTGGAGAGCAACTGCACAGGAGTACAGATGGCATCCTGACTGGAGCTCAGACCTTGGCTTCCACTGCCATCTGTGGAATCGTACATTCAATTTTTGGAGGTCAACCGTTGCTAATTCTTGGAGTGGCTGAGCCAACTGTAATTATGTATACATTCATGTATAATTTTGCCAAAGGCAGAGCAGATTTGGGCCC

Ace file of the UniGene sp_v1.1_unigene42899

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	anion exchange family protein	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	boron transporter	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	borate transport	GO:0046713	Biological Process	92%
Blast2go	borate efflux transmembrane transporter activity	GO:0080139	Molecular Function	92%
Blast2go	endosome	GO:0005768	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	lateral plasma membrane	GO:0016328	Cellular Component	92%
Blast2go	columella	GO:0043674	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	92%
Blast2go	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Distance to subject end: 550 aas, your sequence is shorter than subject: 117 - 671

Fln protein: MEETFVPFRGIKNDLKGRLLCYKQDWTGGFTAGYRILAPTTYIFFASAIPVISFGEQLHRSTDGILTGAQTLASTAICGIVHSIFGGQPLLILGVAEPTVIMYTFMYNFAKGRADLG

Protein Length: 118

Fln nts: GGACAGCAGTTCACAGTATTTGTTAAAGCCTCAATAACAAATACTGTGAACTGCTGTCCAAAAAAATTCCTTATAGCAATGTAGTTGTCATCTCAGTTGCTCGACTTCCATATAGGTGTTTTTAGGTTCTGTGTTACTTTCTTAAACCCTTTTTCCGTATTTCAATCGCTGAAGAAAAAAATTTATATCCATCTTCTACTTGTTACTTCTTGAA_-_ATGGAGGAAACTTTTGTCCCATTTCGAGGTATCAAGAACGATTTGAAAGGAAGATTACTGTGTTACAAGCAAGACTGGACTGGTGGCTTCACTGCAGGATACAGAATTCTTGCTCCCACAACTTACATATTCTTTGCATCAGCCATTCCCGTGATATCATTTGGAGAGCAACTGCACAGGAGTACAGATGGCATCCTGACTGGAGCTCAGACCTTGGCTTCCACTGCCATCTGTGGAATCGTACATTCAATTTTTGGAGGTCAACCGTTGCTAATTCTTGGAGTGGCTGAGCCAACTGTAATTATGTATACATTCATGTATAATTTTGCCAAAGGCAGAGCAGATTTGGGCCC

Fln Alignment:

sp_v1.1_unigene42899___PFRGIKNDLKGRLLCYKQDWTGGFTAGYRILAPTTYIFFASAIPVISFGEQLHRSTDGILTGAQTLASTAICGIVHSIFGGQPLLILGVAEPTVIMYTFMYNFAKGRADLG
B8LRN9_______________PFRGIINDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTLASTALCGIIHSILGGQPLLILGVAEPTVLMYTYMFNFAKNRSDLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain