SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42745

Length: 1621 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene42745

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Voltage-dependent anion-selective channel, putative n=1 Tax=Ricinus communis RepID=B9S2B6_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	voltage-dependent anion-selective channel protein hsr2	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	67%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	67%
Blast2go	cell wall	GO:0005618	Cellular Component	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	67%
Blast2go	nucleolus	GO:0005730	Cellular Component	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	67%
Blast2go	vacuole	GO:0005773	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Porin, eukaryotic type	IPR001925	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: your sequence is shorter than subject: 237 - 276

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQGWGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP*

Protein Length: 238

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCGTCGTGACCTTGGCTGTCACTCATTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAGGATGGGGTGAAGTTTCGTTTGACACTGCATCGGGAAACTTCTTGAAATATGATGCAGGCTTGAGTTTTTCCAAGCCTGATTTCGTTTCTTCTTTGACCTTAACTGGTAAGGGTGACACCTTGAAGGCATCTTACTTGCATACTGTGAGTCCTCTGACAAAGACTGCTGTTGGAGCAGAGATATCACATAGCTTTTCAAGGAACGAGAATACGTTCACCATAGGCACTCAGCATGCTTTGGACCCACTGACAACAGTTAAGGGGCGCCTCAATAATTATGGAAGGGCAGCTGCAGTACTTCAGCATGAGTGGAGGCCTAAAAGTTTTGTTAATCTTTCTGGTGAGGTGGACACCAAAGCCCTTCACAACAGTGCAAAGGTGGGGCTATCTCTGGTTTTGAAGCCTTGA___AGGATATGCACTATTTGGTACAGATTTAAGCGAAGGTCTGTGCTAAATTTTGATTGGAATTTTTGAGTTTTTCCTTTCAGAATAATTATTTCAATGCCTGTGCTTTCTGTTGAGGCACAGAGCAGCTCAGCACCTTGACTTAATTAGCTATGTAATTTTGTGAGTCAGATGCTGTTAATTTTTTAAGGCACATGCTCTTGAAAATGGGTGTTGCCAAACATGGTTGGCTGGAGCTTCAATCTGGTTGAAAAGTTGTGAAACATTTTTGGTTTTAGGCAATGGTAAGAGTATTTGATGGCAATGCTGAGCTCTTCAGTATTTATCTTCAGTATTTGATATGGTGGGGTTTTGTTCAGGCCCTTCATTTCGTATTGTTTCAGCATTTGGACGAAGGCTTAGACCTTCCCATTTTGATTGAATTAATAAGTTGAGGGTGAATAATTTCTGGTAAGTAGTCTTCCTTTTTCTGCAGAAGCCTGACTTGTAATAATATGGTGCCAGACTTTGTGGTTATGTTATCCATTTTTACTGTGGTTCTATTAGATGTGCTGCAATACTTTCATTGCGTTAATGTTTATGTTAAATGCCTGCAATGTAAGCCAGTTAGAAGTAACAGAGTATAGGAAGGATTAGCTAGCTAGAACATCCAAGCAATACAATAAATAAACGTATTCTGGCTTTAGCCTTTTTCCAAGGTTATTAAGATAGCTCTTATGTTAACTGCATTGTGAGGCAGTTTGGGAATTGTGCTATTGGCTGGTAGAGATACATTATTTGG

Fln Alignment:

sp_v1.1_unigene42745___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQG----------------------------------------WGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP
A9NU89_______________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGLKTILSFTVPDQRSGKVELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRSENTFTIGTQHALDPLTTVKGRLNNYGKAAALLQHEWRPKSFVTLSGEVDTKALHNSAKVGLSLILKP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1372		25		75	0.996473
1375	75		25		0.996473
1377		25		75	0.996473
1378	75	25			0.996473
1379	75			25	0.996473
1382	75		25		0.996478
1383			25	75	0.996474
1384		25	75		0.996474
1387		25	25		0.995533
1388	50		50		1.0
1390		25		25	0.995535
1391	25	75			0.996474
1564		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain