SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42739

Length: 725 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene42739

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9N2W3_POPTR	-	-	6.99949e-42	57%
FL-Next	sp=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	mammalian mhc iii region protein g9a	-	-	8.12753e-44	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	8.12753e-44	59%
Blast2go	response to chitin	GO:0010200	Biological Process	8.12753e-44	59%
Blast2go	chromatin silencing by small RNA	GO:0031048	Biological Process	8.12753e-44	59%
Blast2go	histone methylation	GO:0016571	Biological Process	8.12753e-44	59%
Blast2go	methyl-CpNpG binding	GO:0010428	Molecular Function	8.12753e-44	59%
Blast2go	methyl-CpNpN binding	GO:0010429	Molecular Function	8.12753e-44	59%
Blast2go	histone methyltransferase activity	GO:0042054	Molecular Function	8.12753e-44	59%
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	8.12753e-44	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SRA-YDG	IPR003105	-	8.12753e-44	59%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
630	66		33		0.997452
631	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain