SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42723

Length: 554 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42723
GTTAGATCCTCAGTTCTCTCGAGCTTCTCAAGAGTTGAAGGACACCATTTCCAAACTGATGGAGATTCACGCGTCTCCCAACCTGGCGGACTTTTTCCCCTTGCTTCACTGGTTCGATCCACAGGGTGTGTACCGTAATGCGGGAATCTATATGAAAAAAGTGTATGATGTTATCGATAAATTCATGGAGGATCGTCTGGCCACCAGATCAGGCGAAAGCAGTGATAGAAGTTACAGTGAAAAGGATCTGTTGGACGTTCTACTGGATATGAGAAGCGACGAATTTTCTCTCACCCATATCAGAGGCTACTTAACTGACCTATTTGGGGCCGGAAGCGATACAACCGCAACGACAATAGAATGGGCGATGGCAGAACTGATCCGCAATCCGGAGAAGATGAAACGAGCCCAAGCCGAATTGGACGAGGTAGTCGGGCGCCACCGAATGGTTGAAGAGAGTGACGCAGAACGTCTCCCTTATCTGCGAGGAGTGGTCAAAGAAGTGTTTCGATTGCATCCTGCCGTTCCTTTTCTCATCCCTCACAGAGCCGAAC

Ace file of the UniGene sp_v1.1_unigene42723

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450, putative (EC:1.14.13.71)	-	-	9.99967e-42	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	cytochrome p450	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	67%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD2

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 184 - 441

Fln protein: LDPQFSRASQELKDTISKLMEIHASPNLADFFPLLHWFDPQGVYRNAGIYMKKVYDVIDKFMEDRLATRSGESSDRSYSEKDLLDVLLDMRSDEFSLTHIRGYLTDLFGAGSDTTATTIEWAMAELIRNPEKMKRAQAELDEVVGRHRMVEESDAERLPYLRGVVKEVFRLHPAVPFLIPHRAE

Protein Length: 185

Fln nts: GTTAGATCCTCAGTTCTCTCGAGCTTCTCAAGAGTTGAAGGACACCATTTCCAAACTGATGGAGATTCACGCGTCTCCCAACCTGGCGGACTTTTTCCCCTTGCTTCACTGGTTCGATCCACAGGGTGTGTACCGTAATGCGGGAATCTATATGAAAAAAGTGTATGATGTTATCGATAAATTCATGGAGGATCGTCTGGCCACCAGATCAGGCGAAAGCAGTGATAGAAGTTACAGTGAAAAGGATCTGTTGGACGTTCTACTGGATATGAGAAGCGACGAATTTTCTCTCACCCATATCAGAGGCTACTTAACTGACCTATTTGGGGCCGGAAGCGATACAACCGCAACGACAATAGAATGGGCGATGGCAGAACTGATCCGCAATCCGGAGAAGATGAAACGAGCCCAAGCCGAATTGGACGAGGTAGTCGGGCGCCACCGAATGGTTGAAGAGAGTGACGCAGAACGTCTCCCTTATCTGCGAGGAGTGGTCAAAGAAGTGTTTCGATTGCATCCTGCCGTTCCTTTTCTCATCCCTCACAGAGCCGAAC

Fln Alignment:

sp_v1.1_unigene42723___DPQFSRASQELKDTISKLMEIHASPNLADFFPLLHWFDPQGVYRNAGIYMKKVYDVIDKFMEDRLATRSGESSDRSYSEKDLLDVLLDMRSDEFSLTHIRGYLTDLFGAGSDTTATTIEWAMAELIRNPEKMKRAQAELDEVVGRHRMVEESDAERLPYLRGVVKEVFRLHPAVPFLIPHRAE
B8LKD2_______________DSQFARASQELKDALSKVMVLYATPNLADFFPCLQFLDPQGVYRNTEINFKKMYDVMDKFIEDRLVTRSGESRDRSYSEKDMLDVLLEKRSDEFTLDHIRGYLTDIFGAGSDTTATTIEWAMTELIRNPEKMKRVQAELEEVVGRERMVEESDTERLPYLRAVVKEVLRLHPAAPFLIPHRAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain