SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42711

Length: 329 nt

UniGene Fasta

>sp_v1.1_unigene42711
TGTGATTGTTGATCGAGGCTCTTTGCTCGATATGCAGGTCTCGTAATTTCAAAGGAAATGGAAGAAATGGAGAACATACCGAGACTCTGCGCGGAAATGCAACTGCTAGAATATCCAGAGGAGTACATCATCAAACCGTCTGATGGTGGATCTTACCAGCCTCTTTCTATAAGCCGTTCAGATGGGTCTCTAAATCTAATCAGTGAAGCACCTATCACCAGTGCAATGGAAATGACTGTTATTTATGGTGTAGTTGGTGCAATTAAGTTACTTGCAGGTACATATGTATTTGTAATAACTTCTCGGAAGCAGGTTGGCATGCATCGAGG

Ace file of the UniGene sp_v1.1_unigene42711

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Suppressor of actin, putative n=1 Tax=Ricinus communis RepID=B9S6U1_RICCO	-	-	8.0e-15	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	phosphoinositide phosphatase family protein	-	-	3.35371e-33	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	3.35371e-33	70%
Blast2go	phosphatidylinositol-4-phosphate phosphatase activity	GO:0043812	Molecular Function	3.35371e-33	70%
Blast2go	plasma membrane of cell tip	GO:0031520	Cellular Component	3.35371e-33	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL30

Fln msg: Distance to subject end: 495 aas, your sequence is shorter than subject: 90 - 573

Fln protein: MEEMENIPRLCAEMQLLEYPEEYIIKPSDGGSYQPLSISRSDGSLNLISEAPITSAMEMTVIYGVVGAIKLLAGTYVFVITSRKQVGMHR

Protein Length: 91

Fln nts: TGTGATTGTTGATCGAGGCTCTTTGCTCGATATGCAGGTCTCGTAATTTCAAAGGAA_-_ATGGAAGAAATGGAGAACATACCGAGACTCTGCGCGGAAATGCAACTGCTAGAATATCCAGAGGAGTACATCATCAAACCGTCTGATGGTGGATCTTACCAGCCTCTTTCTATAAGCCGTTCAGATGGGTCTCTAAATCTAATCAGTGAAGCACCTATCACCAGTGCAATGGAAATGACTGTTATTTATGGTGTAGTTGGTGCAATTAAGTTACTTGCAGGTACATATGTATTTGTAATAACTTCTCGGAAGCAGGTTGGCATGCATCGAGG

Fln Alignment:

sp_v1.1_unigene42711___MQLLEYPEEYIIKPSDGGSYQPLSISRSDGSLNLISEAPITSAMEMTVIYGVVGAIKLLAGTYVFVITSRKQVGMHR
B8LL30_______________MQLLEYPEEYIIKPSDGGSYQPLSISRLDGSLNLIGEAPITSPMEMTVIYGVVGAIKLLAGTYVFVITSRKQVGMHQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
101		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain