SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42667

Length: 431 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene42667
GAAAAGCATACAACTGTCAGAGCAGCTGACAGACCTTAGAGAACTCGACGTTTCTGGATGCTCTAGCTTAGAAGCGCTGTCAGGTGTCGAACATTTGAGGTCAATGAAGGAGTTGAAGGCTTCTGGCTGTAGGAAGTTGAAGAGCATACAGTTGTCCGAGCAGCTGACACAGCTTCGAACACTGGACATCTCTGGATGCTCTGACTTAGAAGCACTTCCTGGTTTTGAACATTTGAGGTCGTTGTGGAAGTTGAAGGCGTCTGGCTGCGGAAAGTTGAAGAGTATACAGGGGTCAGAGCTGCTGACTGAAGTTCGAGAATTAGACGTTTCTGAATGCTTCGATTTAGAAGAGCTGCCGTGGATTGAGCATTTGAGGTCTCTGGAGAAGTTAAATGCATCTGGCTGTGGAAGTTGAAGTGGATACAGGGGTT

Ace file of the UniGene sp_v1.1_unigene42667 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	3.0e-20	47%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	65%
Blast2go	expression site-associated gene 8 protein	-	-	2.0258e-38	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: your sequence is shorter than subject: 138 - 1490

Fln protein: KSIQLSEQLTDLRELDVSGCSSLEALSGVEHLRSMKELKASGCRKLKSIQLSEQLTQLRTLDISGCSDLEALPGFEHLRSLWKLKASGCGKLKSIQGSELLTEVRELDVSECFDLEELPWIEHLRSLEKLNASGCGS*

Protein Length: 139

Fln nts: GAAAAGCATACAACTGTCAGAGCAGCTGACAGACCTTAGAGAACTCGACGTTTCTGGATGCTCTAGCTTAGAAGCGCTGTCAGGTGTCGAACATTTGAGGTCAATGAAGGAGTTGAAGGCTTCTGGCTGTAGGAAGTTGAAGAGCATACAGTTGTCCGAGCAGCTGACACAGCTTCGAACACTGGACATCTCTGGATGCTCTGACTTAGAAGCACTTCCTGGTTTTGAACATTTGAGGTCGTTGTGGAAGTTGAAGGCGTCTGGCTGCGGAAAGTTGAAGAGTATACAGGGGTCAGAGCTGCTGACTGAAGTTCGAGAATTAGACGTTTCTGAATGCTTCGATTTAGAAGAGCTGCCGTGGATTGAGCATTTGAGGTCTCTGGAGAAGTTAAATGCATCTGGCTGTGGAAGTTGA___AGTGGATACAGGGGTT

Fln Alignment:

sp_v1.1_unigene42667___KSIQLSEQLTDLRELDVSGCSSLEALSGVEHLRSMKELKASGCRKLKSIQLSEQLTQLRTLDISGCSDLEALPGFEHLRSLWKLKASGCGKLKSIQGSELLTEVRELDVSECFDLEELPWIEHLRSLEKLNASGC
E9NZS6_______________KSIRVPEQRTKLREIDASCCSELEDLPGVEHLRSLEKLWVCGCKKLKSIRGLTQLTQLRELDISECSELEELTGIEHLRSLEKLWAYDCKKLKSIRVSAQLTQLRELDVSECSELEELPSIEHSRSLDKLRACNC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
253	33		66		0.997455
258		66		33	0.997453
259			66	33	0.997453
283		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain