SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42634

Length: 521 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene42634
AGTCGTTGGAGTTTAGGAGTANGGGGTTTTTGAAGGGGTCGAGCAGAGCCAACTTCACGTCATGGTGGTGCCCTTTCCAGGGCAAAGCCATATCAATCCAATGTTGCAGTTTGCCAAACGTCTGGCCTCTAAAAATGTCGGGGTCACCTTTGTGATGACGGAGGCAAACCACAAGCGCATATGAAAAGCACAAGGAGCAACACCCGGCGCCTCAAAGAAGTCCGAGGAAATTCGGTTTGAGACAATCCCAGACGGACTAACTTCGGATTCTGAGAGGAACGACGTGGTGATTTTAACGGAGATGCTATACAAGACAGGAGGAGTGACGTTGGGAAATCTAATAGAGAGTGTCAATGCTCAAGGCCCCAAGATTTCTTGCATCATTCATGACTCTTTTCTTGGATGGGTTCCGGAGGTTGCGAAGAAATTTAAGATTCCTTCGGCGCTTTTCTGGACGCAATCTTGTGCAGTTTATCCATCTATCACCATTTTGCCCATGGAAAACTGGCTGCCCAGTTGGA

Ace file of the UniGene sp_v1.1_unigene42634 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucuronosyltransferase, putative (EC:2.4.1.115)	-	-	2.0e-19	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	udp glucosyltransferase related	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR3

Fln msg: Distance to subject end: 314 aas, your sequence is shorter than subject: 153 - 481

Fln protein: MVVPFPGQSHINPMLQFAKRLASKNVGVTFVMTEANHKRI*KAQGATPGASKKSEEIRFETIPDGLTSDSERNDVVILTEMLYKTGGVTLGNLIESVNAQGPKISCIIHDSFLGWVPEVAKKFKIPSALFWTQSCAVYPSITILPMENWLPSW

Protein Length: 154

Fln nts: AGTCGTTGGAGTTTAGGAGTAtGGGGTTTTTGAAGGGGTCGAGCAGAGCCAACTTCACGTC_-_ATGGTGGTGCCCTTTCCAGGGCAAAGCCATATCAATCCAATGTTGCAGTTTGCCAAACGTCTGGCCTCTAAAAATGTCGGGGTCACCTTTGTGATGACGGAGGCAAACCACAAGCGCATATGAAAAGCACAAGGAGCAACACCCGGCGCCTCAAAGAAGTCCGAGGAAATTCGGTTTGAGACAATCCCAGACGGACTAACTTCGGATTCTGAGAGGAACGACGTGGTGATTTTAACGGAGATGCTATACAAGACAGGAGGAGTGACGTTGGGAAATCTAATAGAGAGTGTCAATGCTCAAGGCCCCAAGATTTCTTGCATCATTCATGACTCTTTTCTTGGATGGGTTCCGGAGGTTGCGAAGAAATTTAAGATTCCTTCGGCGCTTTTCTGGACGCAATCTTGTGCAGTTTATCCATCTATCACCATTTTGCCCATGGAAAACTGGCTGCCCAGTTGGA

Fln Alignment:

sp_v1.1_unigene42634___SQLHVMVVPFPGQSHINPMLQFAKRLASKNVGVTFVMTEANHKRI*KAQGATPGASKKSEEIRFETIPDGLTSDSERNDVVILTEMLYKTGGVTLGNLIESVNAQGPKISCIIHDSFLGWVPEVAKKFKIPSALFWTQSCAVY
B8LKR3_______________SKLHVLVVPFPGQGHINPMMQFAKRLSSKNLQVTFVTTEANRKRMLQSQDTTSEVSKKSGEVRFETISDGLTSDSERNDIVILSDMLCKIGGSMLVNLIERLNAQGDHISCIVQDSFLPWVPEVAKKFNIPSVFFWTQSCAVY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
292		33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain