SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42613

Length: 302 nt

UniGene Fasta

>sp_v1.1_unigene42613
CTTGAATCCAATGGCCAAGATCCAAGTGGTTCGGAATATGAGTTGAGGGAACGATGTGCCGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGCCCGTTGTGTGAAGGTGGATTGGAATATTCTGGTGGTCAGTACAAATGTCGAGGCTATCTTTCTGCATGGAGCAAATGTAGTTTCTCAACGACCAATCCTGAACGTATTAAAGGGAAATGGAAAATTCCGAAGGAAACAGATAATGCCTATCTTAAGGAGTGGTTTAAATCACAAAAGGGAAAGAAGCTTGTTCGCATTCTGCCTCCACT

Ace file of the UniGene sp_v1.1_unigene42613

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	poly [ADP-ribose] polymerase, putative (EC:1.3.1.74); K10798 poly [ADP-ribose] polymerase [EC:2.4.2.30]	-	-	3.0e-37	67%
FL-Next	sp=Poly [ADP-ribose] polymerase 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	67%
Blast2go	poly(adp-ribose) polymerase	-	-	5.15117e-42	73%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.4.2.3-	-	3.0e-37	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	5.15117e-42	73%
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	5.15117e-42	73%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	5.15117e-42	73%
Blast2go	DNA repair	GO:0006281	Biological Process	5.15117e-42	73%
Blast2go	binding	GO:0005488	Molecular Function	5.15117e-42	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	5.15117e-42	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PADR1	IPR012982	-	5.15117e-42	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7EYV7

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 100 - 977

Fln protein: LESNGQDPSGSEYELRERCADGMLFGALGKCPLCEGGLEYSGGQYKCRGYLSAWSKCSFSTTNPERIKGKWKIPKETDNAYLKEWFKSQKGKKLVRILPP

Protein Length: 101

Fln nts: CTTGAATCCAATGGCCAAGATCCAAGTGGTTCGGAATATGAGTTGAGGGAACGATGTGCCGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGCCCGTTGTGTGAAGGTGGATTGGAATATTCTGGTGGTCAGTACAAATGTCGAGGCTATCTTTCTGCATGGAGCAAATGTAGTTTCTCAACGACCAATCCTGAACGTATTAAAGGGAAATGGAAAATTCCGAAGGAAACAGATAATGCCTATCTTAAGGAGTGGTTTAAATCACAAAAGGGAAAGAAGCTTGTTCGCATTCTGCCTCCACT

Fln Alignment:

sp_v1.1_unigene42613___LESNGQDPSGSEYELRERCADGMLFGALGKCPLCEGGLEYSGGQYKCRGYLSAWSKCSFSTTNPERIKGKWKIPKETDNAYLKEWFKSQKGKKLVRILPP
Q7EYV7_______________LEANGQDTSGPERHLLDRCADGMLFGALGTCPVCSSFLYYHGGQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIPDEMDNGYLTKWFKSQKAKKPERVLPP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
140	33		66		0.997452
142		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain