SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42579

Length: 309 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42579
AAAATAGTAGAGGCATTGGCCAATCTAGCAAGTGTACATGCAAGGGATCCAGCTTTTGACTCACCATATTGTTTGGAGGCCAGAATCCAKGGATTTGATGGTCCTGCATGGAAGAAACTACTTGGAATAAAGTTCACAGGAGGGAAGCTGGATGATATTACCGTAATTGTAGGGACAGTAGTCAATGCATTGATGTTACCACAACTTGGTCATCTTGATGGAGTCAAAGATTTTCAGAAAGAATTTTCTCGCAATAATGGAATTAGACTCTTTGTTWGAAGGTAATAGTCTAACCAACAAGCTTCAACC

Ace file of the UniGene sp_v1.1_unigene42579

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RRI5_RICCO	-	-	2.0e-16	70%
FL-Next	Isoform 2 of Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170	-	-	0.0	65%
Blast2go	senescence-associated protein	-	-	3.6767e-16	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	3.6767e-16	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O64730-2

Fln msg: your sequence is shorter than subject: 93 - 221

Fln protein: KIVEALANLASVHARDPAFDSPYCLEARIHGFDGPAWKKLLGIKFTGGKLDDITVIVGTVVNALMLPQLGHLDGVKDFQKEFSRNNGIRLFV*

Protein Length: 94

Fln nts: AAAATAGTAGAGGCATTGGCCAATCTAGCAAGTGTACATGCAAGGGATCCAGCTTTTGACTCACCATATTGTTTGGAGGCCAGAATCCAtGGATTTGATGGTCCTGCATGGAAGAAACTACTTGGAATAAAGTTCACAGGAGGGAAGCTGGATGATATTACCGTAATTGTAGGGACAGTAGTCAATGCATTGATGTTACCACAACTTGGTCATCTTGATGGAGTCAAAGATTTTCAGAAAGAATTTTCTCGCAATAATGGAATTAGACTCTTTGTTtGA___AGGTAATAGTCTAACCAACAAGCTTCAACC

Fln Alignment:

sp_v1.1_unigene42579___LANLASVHARDPAFDSPYCLEARIHGFDGPAWKKLLGIKFTGGKLDDITVIVGTVVNA
O64730-2_____________LAEVASSHSRDTEFESPYALEARAKGFDVPLWKKVLGKKLTGGKLDDVTVIVAKVVSS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
105		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain