SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42537

Length: 364 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene42537
AGACCTGGGAGACAATGAAGCGTAATGAGTGCTTTCCCACTGTGGTCTCTTATACTGCCATTATCAAGATATTGCTCAAAACAATAGGCCGGAGGAGGCTCGGGCTTTGTATAAGGAGATGCTGGAAGCAAATCTTTCTCCTAACTGTTACACATACACGGTTTTGATTGAGTACTTGGCCGATCAAGGTAAGTTTGAGGGGGCTTTTGGCATCTTCACTCAAATGAGAGAGCTTAATGTCGAACCGAGTAAAGCTACGTTTAATATCCTTGTTCAGAAATGCGCCAAAGCAGGTCGAACTAATACAATGGTTGAAGTATTGAAGTGCATGAAATCTTTTCGTCATGTGCTTCGCCCATCCATA

Ace file of the UniGene sp_v1.1_unigene42537 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGH5_RICCO	-	-	1.0e-22	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.00605e-22	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 270 aas, your sequence is shorter than subject: 121 - 700

Fln protein: DLGDNEA**VLSHCGLLYCHYQDIAQNNRPEEARALYKEMLEANLSPNCYTYTVLIEYLADQGKFEGAFGIFTQMRELNVEPSKATFNILVQKCAKAGRTNTMVEVLKCMKSFRHVLRPSI

Protein Length: 122

Fln nts: AGACCTGGGAGACAATGAAGCGTAATGAGTGCTTTCCCACTGTGGTCTCTTATACTGCCATTATCAAGATATTGCTCAAAACAATAGGCCGGAGGAGGCTCGGGCTTTGTATAAGGAGATGCTGGAAGCAAATCTTTCTCCTAACTGTTACACATACACGGTTTTGATTGAGTACTTGGCCGATCAAGGTAAGTTTGAGGGGGCTTTTGGCATCTTCACTCAAATGAGAGAGCTTAATGTCGAACCGAGTAAAGCTACGTTTAATATCCTTGTTCAGAAATGCGCCAAAGCAGGTCGAACTAATACAATGGTTGAAGTATTGAAGTGCATGAAATCTTTTCGTCATGTGCTTCGCCCATCCATA

Fln Alignment:

sp_v1.1_unigene42537___LSHCGLLYCHYQDIAQNNRPEEARALYKEMLEANLSPNCYTYTVLIEYLADQGKFEGAFGIFTQMRELNVEPSKATFNILVQKCAKAGRTNTMVEVLKCMK
B8LL58_______________LTYTSMIQCFFL----KEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain