SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42448

Length: 249 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene42448
ATGGGGAAATAGATAAAAATGTCTTACATTTCCTCTGCTCCTCTACTGAACACGTTGGTGGAAACTCCCTTTCGGGTTACAGTACCATCACAGAGTAGAGGGAGACGATTTTTTATCAGCGCAGTGCATAAGCGCTCTGCGAACCCTGTTTACGTTCCAACTCCTGCACACAGAGAACTCCGGGCACCTCACAGCGGGTATCATTATGATGGAAGTGTTCGGAGGTTTTTTGAAGGTTGGTACTTTAAA

Ace file of the UniGene sp_v1.1_unigene42448

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tocopherol cyclase n=1 Tax=Eucalyptus gunnii RepID=Q7XAF0_EUCGU	-	-	3.0e-12	72%
FL-Next	sp=Tocopherol cyclase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	tocopherol cyclase	-	-	5.4814e-12	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	5.4814e-12	83%
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	5.4814e-12	83%
Blast2go	chlorophyll metabolic process	GO:0015994	Biological Process	5.4814e-12	83%
Blast2go	vitamin E biosynthetic process	GO:0010189	Biological Process	5.4814e-12	83%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	5.4814e-12	83%
Blast2go	regulation of defense response	GO:0031347	Biological Process	5.4814e-12	83%
Blast2go	xanthophyll metabolic process	GO:0016122	Biological Process	5.4814e-12	83%
Blast2go	response to high light intensity	GO:0009644	Biological Process	5.4814e-12	83%
Blast2go	phloem sucrose loading	GO:0009915	Biological Process	5.4814e-12	83%
Blast2go	tocopherol cyclase activity	GO:0009976	Molecular Function	5.4814e-12	83%
Blast2go	plastoglobule	GO:0010287	Cellular Component	5.4814e-12	83%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q94FY7

Fln msg: Distance to subject end: 390 aas, atg_distance in limit (1-15): atg_distance = 12, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 488

Fln protein: MSYISSAPLLNTLVETPFRVTVPSQSRGRRFFISAVHKRSANPVYVPTPAHRELRAPHSGYHYDGSVRRFFEGWYFK

Protein Length: 78

Fln nts: ATGGGGAAATAGATAAAA_-_ATGTCTTACATTTCCTCTGCTCCTCTACTGAACACGTTGGTGGAAACTCCCTTTCGGGTTACAGTACCATCACAGAGTAGAGGGAGACGATTTTTTATCAGCGCAGTGCATAAGCGCTCTGCGAACCCTGTTTACGTTCCAACTCCTGCACACAGAGAACTCCGGGCACCTCACAGCGGGTATCATTATGATGGAAGTGTTCGGAGGTTTTTTGAAGGTTGGTACTTTAAA

Fln Alignment:

sp_v1.1_unigene42448___APLLNTLVETPFRVT--VPSQSRGRRFFISAVH----KRSANPVYVPTPAHRELRAPHSGYHYDGSVRRFFEGWYFK
Q94FY7_______________SPLTRSLV--PFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain