SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42334

Length: 457 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42334
AGATCTTTTTGAATGCTTCTACTTCTCTTAGAAGTTCCGAATGGAAGTCTTTATCAAAATTAAAGCAATTTTTTAGACTTCACAGAGAAGATTTGGACCCGTTTGGAGAACAAGTTCTAGACTCTGTCCTGGAAGAAGAGAACATTGAGGATGAAGAAGGATTGAAACACATAGCTCGGTATATAGAATCTATTGAGACTCAGGCAAAGGAGTTTTGGCTTGTGTTTCAGAATGAAGGTCAATCCTTGTCAAAGTTGATCTACACAGCAGATGATAGGCATCAAAATAATGAAAAAGAAAAGTCATGGACAAGAGAGAATTTTCAGATCCTACAGCCATCTTCTTGGTGGCACTGGTTGCGACAGACAGAAGAAGGAAAGGAAGTCATGCGCAGCCTTATCTGGCAACTGCTATGGGCTACCAAAGCATGCCATGATCGCAACATCACACACAGAGA

Ace file of the UniGene sp_v1.1_unigene42334

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16)	-	-	3.0e-29	59%
FL-Next	sp=Probable inactive protein kinase At3g63330; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	protein phosphatase	-	-	4.49135e-30	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	4.49135e-30	71%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q8RXY0

Fln msg: Distance to subject end: 226 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 151 - 376

Fln protein: IFLNASTSLRSSEWKSLSKLKQFFRLHREDLDPFGEQVLDSVLEEENIEDEEGLKHIARYIESIETQAKEFWLVFQNEGQSLSKLIYTADDRHQNNEKEKSWTRENFQILQPSSWWHWLRQTEEGKEVMRSLIWQLLWATKACHDRNITHR

Protein Length: 152

Fln nts: AGATCTTTTTGAATGCTTCTACTTCTCTTAGAAGTTCCGAATGGAAGTCTTTATCAAAATTAAAGCAATTTTTTAGACTTCACAGAGAAGATTTGGACCCGTTTGGAGAACAAGTTCTAGACTCTGTCCTGGAAGAAGAGAACATTGAGGATGAAGAAGGATTGAAACACATAGCTCGGTATATAGAATCTATTGAGACTCAGGCAAAGGAGTTTTGGCTTGTGTTTCAGAATGAAGGTCAATCCTTGTCAAAGTTGATCTACACAGCAGATGATAGGCATCAAAATAATGAAAAAGAAAAGTCATGGACAAGAGAGAATTTTCAGATCCTACAGCCATCTTCTTGGTGGCACTGGTTGCGACAGACAGAAGAAGGAAAGGAAGTCATGCGCAGCCTTATCTGGCAACTGCTATGGGCTACCAAAGCATGCCATGATCGCAACATCACACACAGAGA

Fln Alignment:

sp_v1.1_unigene42334___GLKHIARYIESIETQAKEFWLVFQNEGQSLSKLIYTADDRHQNNEKEKSWTRENFQILQPSSWWHWLRQTEEGKEVMRSLIWQLLWATKACHDRNITHR
Q8RXY0_______________GLKHIARYIEYFESRYNDIWLVFHHEGVSLSKLMYTVEEAEISSEKAEE--ASHGQILRPSKWWTWLKTTESGKEEMRRIIWQLLLGLKACHDRNITHR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain