SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42210

Length: 424 nt

UniGene Fasta

>sp_v1.1_unigene42210
CGTCGTGACCTTGGCTGTCACTCATTGGAGTCAGAGGGTACAATAATTCCAGTGTTCTACCACGTGAAGCCTAGCGAACTTCGTTGGACCAAGGGCAAAGATGGAGTGTATGCTCGAGACCTGCAGAAACTTGAAGAGAAGACGACTGATGATCCTCAATCTAGTGAAAAGAAGCCGAGACACGACTCAGCCACTATTGAACAGTGGAGAAAAGCTCTTTTTACTGTTTCTCAAATAAGCGGTTTCGAGCTAGAGTCTAACAGGTAAGCATCCAGATATCCCTCTCCGTAAATTGGTATTAGCTTAAGTTGTACATAGATTAGCTTAAGTTGTACATAGATCTGTGTTAAATGTGAAGCCAAATTCAGGCAGGATTCTAGATCTTTCTATATCAGATCTTTCTAGATCTCCACACAGCCATTAG

Ace file of the UniGene sp_v1.1_unigene42210

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J7_PINTA	-	-	7.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	tir nbs lrr disease resistance protein	-	-	6.83266e-18	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 822 aas, your sequence is shorter than subject: 89 - 1071

Fln protein: RRDLGCHSLESEGTIIPVFYHVKPSELRWTKGKDGVYARDLQKLEEKTTDDPQSSEKKPRHDSATIEQWRKALFTVSQISGFELESNR*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGAGTCAGAGGGTACAATAATTCCAGTGTTCTACCACGTGAAGCCTAGCGAACTTCGTTGGACCAAGGGCAAAGATGGAGTGTATGCTCGAGACCTGCAGAAACTTGAAGAGAAGACGACTGATGATCCTCAATCTAGTGAAAAGAAGCCGAGACACGACTCAGCCACTATTGAACAGTGGAGAAAAGCTCTTTTTACTGTTTCTCAAATAAGCGGTTTCGAGCTAGAGTCTAACAGGTAAGCATCCAGATATCCCTCTCCGTAAATTGGTATTAGCTTAAGTTGTACATAGATTAGCTTAAGTTGTACATAGATCTGTGTTAAATGTGAAGCCAAATTCAGGCAGGATTCTAGATCTTTCTATATCAGATCTTTCTAGATCTCCACACAGCCATTAG

Fln Alignment:

sp_v1.1_unigene42210___SLESEGTIIPVFYHVKPSELRWTKGKD---------------------GVYARDLQKLEEKTTDDPQSSEKKPRHDSATIEQWRKALFTVSQISGFELES
C0PQE2_______________TVKSGSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain