SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42184

Length: 209 nt

UniGene Fasta

>sp_v1.1_unigene42184
AGCAAAGGTTAACAAACCTGAAACAGCTAACACATCTTCGGCTCGACAATAATAAACTTACAGGGCAGGTTCCTCAGGGCTTTGCACTTCTGACAGGTTTAACTGTATTCAATGTGTCATATAATAATTTATCTGGCACATTGAATACAGTTAAACCTGTCAGAAGTAAGATATCTTGTGATAGTTTCACTGGAAATAGTTTCTTAACT

Ace file of the UniGene sp_v1.1_unigene42184

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RGW3_RICCO	-	-	5.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTW8

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 69 - 216

Fln protein: QRLTNLKQLTHLRLDNNKLTGQVPQGFALLTGLTVFNVSYNNLSGTLNTVKPVRSKISCDSFTGNSFLT

Protein Length: 70

Fln nts: AGCAAAGGTTAACAAACCTGAAACAGCTAACACATCTTCGGCTCGACAATAATAAACTTACAGGGCAGGTTCCTCAGGGCTTTGCACTTCTGACAGGTTTAACTGTATTCAATGTGTCATATAATAATTTATCTGGCACATTGAATACAGTTAAACCTGTCAGAAGTAAGATATCTTGTGATAGTTTCACTGGAAATAGTTTCTTAACT

Fln Alignment:

sp_v1.1_unigene42184___LTNLKQLTHLRLDNNKLTGQVPQGFALLTGLTVFNVSYNNLSGTLNT
A9NTW8_______________LGNLKSLVFLRINNNMLTGQIPRGLTSLPNLKVVDISSNNLCGTIPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain