SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42157

Length: 338 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42157
GAAGGCAATCTACAGGCGGCTGTAAATCTGTTAAATGAAATGGTGGGAAAGGGTATTGTTCCAGACACCTTTACTTACAATGCACTGATTAATGGATTTTGCAAGGAAGGAAGTTTTAAGAATGCTTTCGACCTATGTGATGAAATGGTATGCAAAGATATCGCGATGGACAAAGTTACCTACACAACAATAATTAATAGTCTTATGAAGTCAGGAAAAGAACAGGAGGCAAACGTGCTATCTCAGGAAATGGTGGACAGGGGTTTCGTTCCTAGTCATTTCACCTCTGCATTATTTGTTGATGGTTGCAATCAGGATGATGCCAGTAATGCTTACAA

Ace file of the UniGene sp_v1.1_unigene42157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	5.0e-16	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.42127e-17	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	7.42127e-17	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 112 - 420

Fln protein: EGNLQAAVNLLNEMVGKGIVPDTFTYNALINGFCKEGSFKNAFDLCDEMVCKDIAMDKVTYTTIINSLMKSGKEQEANVLSQEMVDRGFVPSHFTSALFVDGCNQDDASNAY

Protein Length: 113

Fln nts: GAAGGCAATCTACAGGCGGCTGTAAATCTGTTAAATGAAATGGTGGGAAAGGGTATTGTTCCAGACACCTTTACTTACAATGCACTGATTAATGGATTTTGCAAGGAAGGAAGTTTTAAGAATGCTTTCGACCTATGTGATGAAATGGTATGCAAAGATATCGCGATGGACAAAGTTACCTACACAACAATAATTAATAGTCTTATGAAGTCAGGAAAAGAACAGGAGGCAAACGTGCTATCTCAGGAAATGGTGGACAGGGGTTTCGTTCCTAGTCATTTCACCTCTGCATTATTTGTTGATGGTTGCAATCAGGATGATGCCAGTAATGCTTACAA

Fln Alignment:

sp_v1.1_unigene42157___EGNLQAAVNLLNEMVGKGIVPDTFTYNALINGFCKEGSFKNAFDLCDEMVCKDIAMDKVTYTTIINSLMKSGKEQEANVLSQEMVDRGFVPSHFTSALFVDG
B8LN20_______________KGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
273	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain