SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42136

Length: 349 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene42136
AGGGTTCAAAGAATTTAGTGACAACAGTGAAAGGCAGCAACGCGGTAAAAGGATATTGTATTGATGTGTTTGTGGCTGCAGTGAAATCGCTTCCTTATACTGTTCATTACACATTTAGACCTTATGGAACAGGGGATTCTACACCCAATTACAACGATCTCGTGGAGCAGGTCGCTTTACAGAAATATGATGCAGTCGTTGGAGACGTTCTTATTGTGAAAAATCGGTCGAAAATTGTGGAATTCACACAGCCTTACATAGAAACAGGCCTGGTTGTAGTGGTTCGTGCAAACGAGATAGAATCGAATCCATGGGCTTTCTTGCGTCCATTTTCACCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene42136

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate-gated kainate-type ion channel receptor subunit GluR5 n=1 Tax=Populus trichocarpa RepID=B9HPN5_POPTR	-	-	1.0e-30	57%
FL-Next	sp=Glutamate receptor 3.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	2.05083e-30	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular sodium ion homeostasis	GO:0006883	Biological Process	2.05083e-30	70%
Blast2go	cellular calcium ion homeostasis	GO:0006874	Biological Process	2.05083e-30	70%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	2.05083e-30	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ionotropic glutamate receptor	IPR001320	-	2.05083e-30	70%
Blast2go	Extracellular solute-binding protein, family 3	IPR001638	-	2.05083e-30	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YT1

Fln msg: Distance to subject end: 320 aas, your sequence is shorter than subject: 115 - 912

Fln protein: GSKNLVTTVKGSNAVKGYCIDVFVAAVKSLPYTVHYTFRPYGTGDSTPNYNDLVEQVALQKYDAVVGDVLIVKNRSKIVEFTQPYIETGLVVVVRANEIESNPWAFLRPFSPRSR

Protein Length: 116

Fln nts: AGGGTTCAAAGAATTTAGTGACAACAGTGAAAGGCAGCAACGCGGTAAAAGGATATTGTATTGATGTGTTTGTGGCTGCAGTGAAATCGCTTCCTTATACTGTTCATTACACATTTAGACCTTATGGAACAGGGGATTCTACACCCAATTACAACGATCTCGTGGAGCAGGTCGCTTTACAGAAATATGATGCAGTCGTTGGAGACGTTCTTATTGTGAAAAATCGGTCGAAAATTGTGGAATTCACACAGCCTTACATAGAAACAGGCCTGGTTGTAGTGGTTCGTGCAAACGAGATAGAATCGAATCCATGGGCTTTCTTGCGTCCATTTTCACCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene42136___KNLVTTVKGSNAVKGYCIDVFVAAVKSLPYTVHYTFRPYGTGDSTPNYNDLVEQVALQKYDAVVGDVLIVKNRSKIVEFTQPYIETGLVVVVRANEIESNPWAFLRPFSP
Q93YT1_______________KEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTPWAFLRPFTP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
329		66	33		0.997459
331			33	66	0.997453
333			33	66	0.997453
334	33			66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain