SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42128

Length: 597 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene42128 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AtRLP35 (Receptor Like Protein 35); kinase/ protein binding	-	-	1.0e-32	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	-
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 284 aas, your sequence is shorter than subject: 199 - 914

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: GLLHNLEYLDLLNNKLSGNIPFQLGNLSNLLSMDLGLNRLSGLIPETLKNLNKLQSFQLANNNLTGIIPKSVGNLQSLRYLNLYSNHLVGYIPPSIGQLKYLVTLNLHNNxxxxxIPSGISNLVSLEILVLSQNNLEGSIPEGINNCTSLVIFSAFSNNFSGTISTSLANCTNIQLLDLSENRLTGELPNHLTFFHDLT

Protein Length: 200

Fln nts: GGTTTGCTGCATAACCTAGAATACCTAGATTTACTCAACAATAAATTGTCTGGGAATATACCATTTCAATTAGGTAATTTGAGCAACCTTTTGTCTATGGATTTAGGTTTAAATAGGCTTAGTGGCCTTATCCCTGAAACCCTTAAAAATTTGAACAAACTTCAGTCATTTCAATTAGCTAACAACAATCTCACAGGTATCATACCAAAATCTGTTGGGAATCTTCAATCTCTCCGATATTTGAATTTATATTCAAACCATTTAGTTGGATATATTCCACCTAGCATTGGTCAACTAAAATATCTAGTCACTCTAAATTTACATAATAACxxxxxxxxxxxxxxxATTCCTAGTGGTATTAGCAATTTGGTTTCACTTGAGATTTTAGTTTTATCCCAAAATAACTTAGAGGGATCAATTCCAGAGGGTATCAATAATTGTACTTCTTTAGTTATTTTCTCAGCTTTCTCTAACAACTTTTCTGGGACTATCTCCACATCTTTGGCCAACTGTACCAACATTCAATTGTTGGATTTAAGTGAAAATAGATTGACAGGGGAACTTCCTAATCATCTCACATTTTTTCATGATTTGACTA

Fln Alignment:

sp_v1.1_unigene42128___KLSGNIPFQLGNLSNLLSMDLGLNRLSGLIPETLKNLNKLQSFQLANNNLTGIIPKSVGNLQSLRYLNLYSNHLVGYIPPSIGQLKYLVTLNLHNNRFLGVFLxxxSIPSGISNLVSLEILVLSQNNLEGSIPEGINNCTSLVIFSAFSNNFSGTISTSLANCTNIQLLDLSENRLTGELPNHLTFFHDLT
B8LLA8_______________RLSGHIPPTLGNCTSLSHLDLSKNSLSSHIPPTLGNCTSLSHLDLSENSLSSKIPPTLGKCISLSYIGLYRNSLSGHMPRTLGNLTQISQIDLSYNNLSGAIPxxxSIPDSISGLVSLSSLILSRNNLVGPIPKGIGNCTSLTIFSAHSNNLSGTLPVSLAYCTNITLIDLSSNNFTGELPESLSFLHQLS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
237		66		33	0.997452
242	66	33			0.997454
243		66		33	0.997457
251	66			33	0.997452
254	66	33			0.997453
255	33	66			0.997464
269	33		66		0.997461
273	66		33		0.997458
274			33	66	0.997454
275	33			66	0.997454
279			66	33	0.997452
281	66	33			0.997452
285		33		66	0.997452
287	66	33			0.997452
288			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain