SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42089

Length: 374 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene42089
ATGGGGGGTCCTCATCTACCGAAGATGGTGGGGAACATAATCCGGCGTTTAAAGGATCCACACTCCGACTCCAGTGTACGTGATGCCTGTGTTGATGCTATGGGGGCTTTAGCTTCCTCACGTGTAGATGCCATGGGGGTTTTTGTGAGGCCCTTGCTTGAGGCTTTAGGCGAGCAGAACCGCCAACTTCAGACTGCGTCTGCATTGTGTCTGGCCCGGGTCATTCAAGTCACTGCTGCTTCCTCGGCCCCCTCCCATTTGTTACCAGCATTGCACAACAAGACTTTGCTTCGGATTTTGAAATTGCTCTCTAATAACAGCTTTTCACCAAATGCCGCGGCTTTGCTTTCGGTGATTGCCAGCATCGTTCAGGC

Ace file of the UniGene sp_v1.1_unigene42089

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Microtubule-associated protein TORTIFOLIA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	protein	-	-	1.80534e-18	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.80534e-18	60%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	1.80534e-18	60%
Blast2go	circumnutation	GO:0010031	Biological Process	1.80534e-18	60%
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.80534e-18	60%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	1.80534e-18	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	1.80534e-18	60%
Blast2go	Armadillo-type fold	IPR016024	-	1.80534e-18	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T041

Fln msg: Distance to subject end: 622 aas, your sequence is shorter than subject: 124 - 864

Fln protein: MGGPHLPKMVGNIIRRLKDPHSDSSVRDACVDAMGALASSRVDAMGVFVRPLLEALGEQNRQLQTASALCLARVIQVTAASSAPSHLLPALHNKTLLRILKLLSNNSFSPNAAALLSVIASIVQ

Protein Length: 125

Fln nts: ATGGGGGGTCCTCATCTACCGAAGATGGTGGGGAACATAATCCGGCGTTTAAAGGATCCACACTCCGACTCCAGTGTACGTGATGCCTGTGTTGATGCTATGGGGGCTTTAGCTTCCTCACGTGTAGATGCCATGGGGGTTTTTGTGAGGCCCTTGCTTGAGGCTTTAGGCGAGCAGAACCGCCAACTTCAGACTGCGTCTGCATTGTGTCTGGCCCGGGTCATTCAAGTCACTGCTGCTTCCTCGGCCCCCTCCCATTTGTTACCAGCATTGCACAACAAGACTTTGCTTCGGATTTTGAAATTGCTCTCTAATAACAGCTTTTCACCAAATGCCGCGGCTTTGCTTTCGGTGATTGCCAGCATCGTTCAGGC

Fln Alignment:

sp_v1.1_unigene42089___HLPKMVGNIIRRLKDPHSDSSVRDACVDAMGALAS-------------SRVDAMGVFVRPLLEALGEQNRQLQTASALCLARVIQVTXXXXXXXXXXXXXXNKTLLRILKLLSNNSFSPNAAALLSVIASIVQ
Q9T041_______________HLTKIIAQIVKRLKD--SDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMGEQNKVVQSGASMCMARMVE------SAASPPVTSFQKLCPRICKLLSNSSFLAK-ASLLPVVSSLSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain