SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene42044

Length: 221 nt

UniGene Fasta

>sp_v1.1_unigene42044
CTCAACAACAGTTGGCTTGGTGCAGTCTTCATTTTTCTGGGGTTACCTGCTTACTCAGGTTGTTGGAGGTATATGGGCAGATAAAGTTGGTGGCAAGCGTGTATTGGGATTTGGAGTAGTTTGGTGGTCACTTGCCACTCTTCTCACACCAATAGCTGCAAGAGTTGGATTGCCTTTCTTGCTTCTTGTCCGTGCATTTATGGGGGTTGGTGAGGGTGTTG

Ace file of the UniGene sp_v1.1_unigene42044

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sialin, putative n=1 Tax=Ricinus communis RepID=B9RDT5_RICCO	-	-	8.0e-32	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	protein	-	-	7.6118e-33	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	7.6118e-33	95%
Blast2go	inorganic diphosphate transmembrane transporter activity	GO:0030504	Molecular Function	7.6118e-33	95%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	7.6118e-33	95%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	7.6118e-33	95%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	7.6118e-33	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major facilitator superfamily	IPR011701	-	7.6118e-33	95%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	7.6118e-33	95%
Blast2go	Major facilitator superfamily domain	IPR020846	-	7.6118e-33	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH1

Fln msg: Distance to subject end: 372 aas, your sequence is shorter than subject: 73 - 671

Fln protein: STTVGLVQSSFFWGYLLTQVVGGIWADKVGGKRVLGFGVVWWSLATLLTPIAARVGLPFLLLVRAFMGVGEGV

Protein Length: 74

Fln nts: CTCAACAACAGTTGGCTTGGTGCAGTCTTCATTTTTCTGGGGTTACCTGCTTACTCAGGTTGTTGGAGGTATATGGGCAGATAAAGTTGGTGGCAAGCGTGTATTGGGATTTGGAGTAGTTTGGTGGTCACTTGCCACTCTTCTCACACCAATAGCTGCAAGAGTTGGATTGCCTTTCTTGCTTCTTGTCCGTGCATTTATGGGGGTTGGTGAGGGTGTTG

Fln Alignment:

sp_v1.1_unigene42044___TVGLVQSSFFWGYLLTQVVGGIWADKVGGKRVLGFGVVWWSLATLLTPIAARVGLPFLLLVRAFMGVGEGV
B8LKH1_______________TVGLVQSSFFWGYLLTQVAGGIWADKVGGKRVLGFGVVWWSIATILTPIAARVGLPFLLLVRAFMGIGEGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain