SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41996

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41996
CGTCGTGACCTTGGCTGTCACTCACTTTTTGAAAATGAATTGTCTGGCAGCATTCCCCCTTCATTGTCCAATATCTCTACTTTGACTAGCTTGGACATTGATCAAAACAAATTTACAGGGCACATTCCATTAGAATTTTGTGCCAAACTCAACTACTTGAATTACCTCTCTTTATGGGGAAATCAACTTAGTGGGAACATACCATATACAATTGGGAATTGTTCCAAACTCCAAAAACTCTAGCTACACGACAACAAATTGACTGGGAGTGTTCCAATAGAGTTGGGTAAACTATCCCTCCTTGAAGAATTATACTTGCATAATAATGAGCTTGAGAGTGATAGCACCACAAAGATCCCCTTTCTTGTATCTATTACAAATTGTTCTAACCTAAAACAACTACACTTGAGTGACAATAAACTAAGTGGTGTATTGCCCCTTTCCATAGGGAGACTTTCTAC

Ace file of the UniGene sp_v1.1_unigene41996 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	1.34637e-26	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.34637e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 153 - 551

Fln protein: RRDLGCHSLFENELSGSIPPSLSNISTLTSLDIDQNKFTGHIPLEFCAKLNYLNYLSLWGNQLSGNIPYTIGNCSKLQKL*LHDNKLTGSVPIELGKLSLLEELYLHNNELESDSTTKIPFLVSITNCSNLKQLHLSDNKLSGVLPLSIGRLS

Protein Length: 154

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTGAAAATGAATTGTCTGGCAGCATTCCCCCTTCATTGTCCAATATCTCTACTTTGACTAGCTTGGACATTGATCAAAACAAATTTACAGGGCACATTCCATTAGAATTTTGTGCCAAACTCAACTACTTGAATTACCTCTCTTTATGGGGAAATCAACTTAGTGGGAACATACCATATACAATTGGGAATTGTTCCAAACTCCAAAAACTCTAGCTACACGACAACAAATTGACTGGGAGTGTTCCAATAGAGTTGGGTAAACTATCCCTCCTTGAAGAATTATACTTGCATAATAATGAGCTTGAGAGTGATAGCACCACAAAGATCCCCTTTCTTGTATCTATTACAAATTGTTCTAACCTAAAACAACTACACTTGAGTGACAATAAACTAAGTGGTGTATTGCCCCTTTCCATAGGGAGACTTTCTAC

Fln Alignment:

sp_v1.1_unigene41996___LGCHSLFENELSGSIPPSLSNISTLTSLDIDQNKFTGHIPLEFCAKLNYLNYLSLWGNQLSGNIPYTIGNCSKLQKL*LHDNKLTGSVPIXXXXXXXXXXXXXXXXXXESDSTTKIPFLVSITNCSNLKQLHLSDNKLSGVLPLSIGRL
B8LRW5_______________LSVFDLSHNEIGGKIPPEIGKLANLTYLNLEWNIFNGSIP-STLGRLQKLERLYLGRNKLQGSIPMEIGGLQTLGLLSLSQNKLSGQIPHSFGQLQQLRDLYLDQNELSGNISP------SIGDCLRLEVLDLSHNRFHGNIPRTVAGL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
140			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain