SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41973

Length: 433 nt

UniGene Fasta

>sp_v1.1_unigene41973
TCACCTTGCTTGGAGGCTGCTGGGTTGTTTCGTTCCTTTGCTGTCTGTCTTTATACTCGAGGCTGCATCCAAATTGTACATTCTATTCAGTTCTGGAACATTTTGTAGAGAATGCCAAATTGTCTTCAAATTACTTCATTATGAACTGTGAAGCCATACTGAAAGTTGCAGAAGCCATTGAAGATCTTCCATTAGGATTGGAAGAAAGATATCTTTTCTGTATCAGTCCAGTTGAAATGGATGACGGTATTTTAGCTCAAGGGCTCATTCAATTTGCAGAAGAGTATGCAAAGAAGGGTTTGGTTAACTTGAAAAAAGTTTTTACACCTGGAACTTTATGTGTACCCAAAACACAAAACGAATTGAAGGAAGTTTGAGTCCATTCACAAGGTTCTAGGTCTCTATATTTGGTTGAGCTTCCGCTTGGAGGACT

Ace file of the UniGene sp_v1.1_unigene41973

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RTM6_RICCO	-	-	2.0e-36	66%
FL-Next	tr=ATP-dependent RNA and DNA helicase, putative; Ricinus communis (Castor bean).	-	-	0.0	66%
Blast2go	atp-dependent rna and dna	-	-	3.22053e-36	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen development	GO:0009555	Biological Process	3.22053e-36	70%
Blast2go	RNA metabolic process	GO:0016070	Biological Process	3.22053e-36	70%
Blast2go	megagametogenesis	GO:0009561	Biological Process	3.22053e-36	70%
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	3.22053e-36	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.22053e-36	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RTM6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, your sequence is shorter than subject: 125 - 547

Fln protein: TLLGGCWVVSFLCCLSLYSRLHPNCTFYSVLEHFVENAKLSSNYFIMNCEAILKVAEAIEDLPLGLEERYLFCISPVEMDDGILAQGLIQFAEEYAKKGLVNLKKVFTPGTLCVPKTQNELKEV*

Protein Length: 126

Fln nts: TCACCTTGCTTGGAGGCTGCTGGGTTGTTTCGTTCCTTTGCTGTCTGTCTTTATACTCGAGGCTGCATCCAAATTGTACATTCTATTCAGTTCTGGAACATTTTGTAGAGAATGCCAAATTGTCTTCAAATTACTTCATTATGAACTGTGAAGCCATACTGAAAGTTGCAGAAGCCATTGAAGATCTTCCATTAGGATTGGAAGAAAGATATCTTTTCTGTATCAGTCCAGTTGAAATGGATGACGGTATTTTAGCTCAAGGGCTCATTCAATTTGCAGAAGAGTATGCAAAGAAGGGTTTGGTTAACTTGAAAAAAGTTTTTACACCTGGAACTTTATGTGTACCCAAAACACAAAACGAATTGAAGGAAGTTTGAGTCCATTCACAAGGTTCTAGGTCTCTATATTTGGTTGAGCTTCCGCTTGGAGGACT

Fln Alignment:

sp_v1.1_unigene41973___LYSRLHPNCTFYSVLEHFVENAKLSSNYFIMNCEAILKVAEAIEDLPLGLEERYLFCISPVEMDDGILAQGLIQFAEEYAKKGLVNLKKVFTPGTLCVPKTQNELKEV
B9RTM6_______________MYSRLHPKKGLYQILEHFVENAKLSPNYFIADCEEVLKVAAVIDEMPLSLNDKYLFCISPVDMNDEISSQGLTQFAENYAKKGIVRLKEIFTPGTLQVPKTQTALKEL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
259		33		66	0.997452
289		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain